Browse Element(s) Details


OsAffx.2658.1.S1_at

Description tigr:9630.m01676
TID=OsAffx.2658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1786011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17840NANA2+10319476..10320009hypothetical protein
LOC_Os02g17850Os.13748.1.S1_at11/112+10330713..10333784tobamovirus multiplication protein 2B, putative, expressed
LOC_Os02g17860OsAffx.2658.1.S1_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860OsAffx.2658.1.S1_x_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860Os.9572.1.S1_at10/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2658.1.S1_at--382--7511Chr02:10346858..10346882 (25 bp)
GTGGAGGGCTCAACGGTGGTGGTGA
LOC_Os02g17860
OsAffx.2658.1.S1_at--598--831Chr02:10346933..10346957 (25 bp)
ATGGAGGTACTGTTGGCGGGCTATA
LOC_Os02g17860
OsAffx.2658.1.S1_at--986--9051Chr02:10346984..10347008 (25 bp)
TGCTTGATGGAGGTGGTGACGTGAT
LOC_Os02g17860
OsAffx.2658.1.S1_at--1089--8931Chr02:10347000..10347024 (25 bp)
TGACGTGATGGGTGGAGGGCTTGAT
LOC_Os02g17860
OsAffx.2658.1.S1_at--742--3791Chr02:10347147..10347171 (25 bp)
CTCCGTTGGCGGACTAGGCAACGGT
LOC_Os02g17860
OsAffx.2658.1.S1_at--23--2011Chr02:10347159..10347183 (25 bp)
ACTAGGCAACGGTGGCGACGGAGGT
LOC_Os02g17860
OsAffx.2658.1.S1_at--1042--3931Chr02:10347177..10347201 (25 bp)
CGGAGGTGGACTGTTATCTTGGTAC
LOC_Os02g17860
OsAffx.2658.1.S1_at--133--8531Chr02:10347183..10347207 (25 bp)
TGGACTGTTATCTTGGTACGGTGGA
LOC_Os02g17860
OsAffx.2658.1.S1_at--743--411Chr02:10347192..10347216 (25 bp)
ATCTTGGTACGGTGGAGATGCATTA
LOC_Os02g17860
OsAffx.2658.1.S1_at--706--1271Chr02:10347207..10347231 (25 bp)
AGATGCATTAGGTGGACTAGACTCC
LOC_Os02g17860
OsAffx.2658.1.S1_at--23--10091Chr02:10347215..10347239 (25 bp)
TAGGTGGACTAGACTCCGATGGTGA
LOC_Os02g17860
Target Sequence 
GTGGAGGGCTCAACGGTGGTGGTGAGGAGCTAGGTGGTGGGCTAGATGAAGGTGGCGGCGGCGACTGGTTGTATGATGGA
GGTACTGTTGGCGGGCTATATGGAGGTGGTGAGGCTGTAGATGGAGTGCTTGATGGAGGTGGTGACGTGATGGGTGGAGG
GCTTGATGGAGGTGGTGGCGGCGACTGGTTGTATGATGGAGCAACTGTTGGGGGACTAGATGGAGGTGGTGAGGTTGTTG
GTGGAGAGCTCGATGACGGTGATGGTGGTGGCTGGTTGTATGATGGGGCCTCCGTTGGCGGACTAGGCAACGGTGGCGAC
GGAGGTGGACTGTTATCTTGGTACGGTGGAGATGCATTAGGTGGACTAGACTCCGATGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis