Browse Element(s) Details


Os.7497.1.S1_at

Description gb:AK060301.1
DB_XREF= gi:32970319
TID=Os.7497.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H07, full insert sequence.
FL= gb:AK060301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1787011/11Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17850Os.13748.1.S1_at11/112+10330713..10333784tobamovirus multiplication protein 2B, putative, expressed
LOC_Os02g17860OsAffx.2658.1.S1_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860OsAffx.2658.1.S1_x_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860Os.9572.1.S1_at10/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17920Os.17563.1.S1_at11/112+10378455..10380695Lactoylglutathione lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7497.1.S1_at--810--6831Chr02:10352269..10352293 (25 bp)
GTTTCTCTTCTTTTTGCTGCATAAG
LOC_Os02g17870
Os.7497.1.S1_at--484--9971Chr02:10352235..10352259 (25 bp)
TACCGTGCCATCAACTGTCTTACAG
LOC_Os02g17870
Os.7497.1.S1_at--500--9871Chr02:10352215..10352239 (25 bp)
TACAGTTTACATCTGCTACCAAAAT
LOC_Os02g17870
Os.7497.1.S1_at--477--2591Chr02:10352174..10352198 (25 bp)
AACGATCGATTGGTAGCCGCTTGTC
LOC_Os02g17870
Os.7497.1.S1_at--403--4131Chr02:10352157..10352181 (25 bp)
CGCTTGTCATGTACTGTCCTGTTAT
LOC_Os02g17870
Os.7497.1.S1_at--126--9091Chr02:10352080..10352104 (25 bp)
TGCTATGCTTAGAACCTGTCACTGC
LOC_Os02g17870
Os.7497.1.S1_at--750--8731Chr02:10352064..10352088 (25 bp)
TGTCACTGCTTCAGCTTCTGGAGAT
LOC_Os02g17870
Os.7497.1.S1_at--449--3091Chr02:10352014..10352038 (25 bp)
CATTTTACCTTATAGTGCCAACCCA
LOC_Os02g17870
Os.7497.1.S1_at--620--2611Chr02:10351995..10352019 (25 bp)
AACCCACCCTTATCGATCATCATTA
LOC_Os02g17870
Os.7497.1.S1_at--1071--4631Chr02:10351903..10351927 (25 bp)
GCGTAGCCATGTTTCCTTGTGAGCA
LOC_Os02g17870
Os.7497.1.S1_at--1132--2091Chr02:10351871..10351895 (25 bp)
ACATGCATGCGTTTTTTGAGTTAGC
LOC_Os02g17870
Target Sequence 
GTTTCTCTTCTTTTTGCTGCATAAGACATGNTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATT
TNNCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGT
GTATATGTTTGTTTCTGTACTTTTGACATATTGCTATGCTTAGAACCTGTCACTGCTTCAGCTTCTGGAGATCTGCACTA
CAAGTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTACACTGATGGGCATTTCATT
ATGTTGAGATGCCAACACTCAGTGATGTATGATTGTTGGGTGGTCAGTGCGTAGCCATGTTTCCTTGTGAGCATGTGTTT
ACATGCATGCGTTTTTTGAGTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis