Browse Element(s) Details


Os.17563.1.S1_at

Description gb:AK058486.1
DB_XREF= gi:32968504
TID=Os.17563.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D09, full insert sequence.
FL= gb:AK058486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1792011/11Lactoylglutathione lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17920Os.17563.1.S1_at11/112+10378455..10380695Lactoylglutathione lyase, putative, expressed
LOC_Os02g17930Os.45422.1.S1_x_at2/112+10382365..10384763hypothetical protein
LOC_Os02g17940Os.10521.1.S1_at11/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_x_at3/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_at1/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17949NANA2+10398695..10399063NA

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17563.1.S1_at--1019--5991Chr02:10379318..10379339 (22 bp)
GAGAGATAACCCTGAATACAAGTAC
LOC_Os02g17920
Os.17563.1.S1_at--805--3011Chr02:10379008..10379144 (25 bp)
AATGCATATGCCCAGATCGCGATCG
LOC_Os02g17920
Os.17563.1.S1_at--492--1271Chr02:10378995..10379019 (25 bp)
AGATCGCGATCGGAACCGACGACGT
LOC_Os02g17920
Os.17563.1.S1_at--1105--2471Chr02:10378897..10378921 (25 bp)
AACACCAAGATCACGTCCATCCTGG
LOC_Os02g17920
Os.17563.1.S1_at--855--3051Chr02:10378757..10378777 (21 bp)
AATCGGTGTTTGTCGACAACATCGA
LOC_Os02g17920
Os.17563.1.S1_at--982--2611Chr02:10378711..10378735 (25 bp)
AACCTGTTCAGAAACCGGGTGCCAG
LOC_Os02g17920
Os.17563.1.S1_at--61--3991Chr02:10378696..10378720 (25 bp)
CGGGTGCCAGTTCTGTTTGTTGAAT
LOC_Os02g17920
Os.17563.1.S1_at--89--7051Chr02:10378630..10378654 (25 bp)
GTAAATGAGCTCGAACTCCATGACC
LOC_Os02g17920
Os.17563.1.S1_at--935--2471Chr02:10378580..10378604 (25 bp)
AACAGAGCATGAGGTTTCGTCCCCG
LOC_Os02g17920
Os.17563.1.S1_at--932--2111Chr02:10378511..10378535 (25 bp)
ACAGGACCTAGCTACCTGATCTGTT
LOC_Os02g17920
Os.17563.1.S1_at--424--3871Chr02:10378496..10378520 (25 bp)
CTGATCTGTTCCAACTTTGAAGCTT
LOC_Os02g17920
Target Sequence 
GAGAGATAACCCTGAATACAAGTACACAGTGGCAATGATGGGGTATGGNTCCNNGAAGACAAGAATGCNTGTNNCTGGAG
CTGACATACAACTATGGTGTCACTGAATATNGACAAGGGGAATGCATATGCCCAGATCGCGATCGGAACCGACGACGTCT
ACAAGACGGCGGAGGTGGTGAAGCTGTTCGGAGGGCAGGTGGTGCGGGAGCCAGGGCCATTGCCGGGGATCAACACCAAG
ATCACGTCCATCCTGGACCCTGATGGCTGGAAATCGGTGTTTGTCGACAACATCGACTTTGCAAAGGAACTGGAGTAAAC
CTGTTCAGAAACCGGGTGCCAGTTCTGTTTGTTGAATGACTAGTGACCAGAGATAAATCTTGCTTGNTTGCAATCACTGT
AAATGAGCTCGAACTCCATGACCAAGAANTTTTGGTGTCTGAATAAATAACAGAGCATGAGGTTTCGTCCCCGTGACGAC
CGGGAAGAGTACAAAACATAGCTTAGATGAATAGATAACAGGACCTAGCTACCTGATCTGTTCCAACTTTGAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis