Browse Element(s) Details


Os.49790.1.S1_x_at

Description gb:AK111597.1
DB_XREF= gi:37988260
TID=Os.49790.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095J03, full insert sequence.
FL= gb:AK111597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1791010/11Casein kinase I, delta isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17860OsAffx.2658.1.S1_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860OsAffx.2658.1.S1_x_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860Os.9572.1.S1_at10/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17920Os.17563.1.S1_at11/112+10378455..10380695Lactoylglutathione lyase, putative, expressed
LOC_Os02g17930Os.45422.1.S1_x_at2/112+10382365..10384763hypothetical protein
LOC_Os02g17940Os.10521.1.S1_at11/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_x_at3/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_at1/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17949NANA2+10398695..10399063NA

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004680molecular_functioncasein kinase activity
GO:0004681molecular_functioncasein kinase I activity
GO:0004712molecular_functionprotein threonine/tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49790.1.S1_x_at--73--8451Chr02:10376245..10376269 (25 bp)
GGCCATGCTGATGCTCCAAGGAGGA
LOC_Os02g17910
Os.49790.1.S1_x_at--316--331Chr02:10376278..10376302 (25 bp)
ATCTCAAAAACTCAGGGCCTCGTTG
LOC_Os02g17910
Os.49790.1.S1_x_at--582--8431Chr02:10376293..10376317 (25 bp)
GGCCTCGTTGATTCCAATGCTCATG
LOC_Os02g17910
Os.49790.1.S1_x_at--1047--8171Chr02:10376317..10376341 (25 bp)
GGAACGAACAATCCAGGGCCTTCTA
LOC_Os02g17910
Os.49790.1.S1_x_at--1092--1051Chr02:10376331..10376355 (25 bp)
AGGGCCTTCTAATCACCTTTAGCAT
LOC_Os02g17910
Os.49790.1.S1_x_at--823--10831NONE
TTGGTCACTGTATATGTCTTCGGGA
NONE
Os.49790.1.S1_x_at--313--2691Chr02:10377067..10377091 (25 bp)
AAGCTGTATGCCCTCAAATGTTTTG
LOC_Os02g17910
Os.49790.1.S1_x_at--78--6791Chr02:10377193..10377217 (25 bp)
GTTAGCCTGTTACTGTTCAGCATCT
LOC_Os02g17910
Os.49790.1.S1_x_at--243--1191Chr02:10377289..10377313 (25 bp)
AGTACCCTCTTTTGTGTTCTACATG
LOC_Os02g17910
Os.49790.1.S1_x_at--1052--8711Chr02:10377325..10377349 (25 bp)
TGTAACGTTTTACCTGGGCTCATTT
LOC_Os02g17910
Os.49790.1.S1_x_at--516--7571Chr02:10377340..10377364 (25 bp)
GGGCTCATTTATTCAGGGTTCTTTG
LOC_Os02g17910
Target Sequence 
GGCCATGCTGATGCTCCAAGGAGGAATATAGCAATCTCAAAAACTCAGGGCCTCGTTGATTCCAATGCTCATGGAACGAA
CAATCCAGGGCCTTCTAATCACCTTTAGCATCTGTATCAGTTCATGAGAGCATATTGGTCCATGCAGACCACCATTGGTC
ACTGTATATGTCTTCGGGAGAGAATCCAGAGCAAAGCTGTATGCCCTCAAATGTTTTGGTGCATGAAGCCGTTGCCAAAA
ATTGCTGTCAGGCTTTTAAGGTGTCCTCTGTATTGATTGAGGTGATTACTACCTAACAGAAACAGTGGTTAGGTGTGCTG
TTAGCCTGTTACTGTTCAGCATCTTTTAGCGTGCAGTGGTCAAGAAGTTCACTTTTCCATATTATGTGGATAATATATGG
AAGCTTAGGAATGTCAGTACCCTCTTTTGTGTTCTACATGTGTGAGTGCATTGTAACGTTTTACCTGGGCTCATTTATTC
AGGGTTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49790.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis