Browse Element(s) Details


OsAffx.2659.1.S1_at

Description tigr:9630.m01679
TID=OsAffx.2659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1789011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17860OsAffx.2658.1.S1_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860OsAffx.2658.1.S1_x_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860Os.9572.1.S1_at10/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17920Os.17563.1.S1_at11/112+10378455..10380695Lactoylglutathione lyase, putative, expressed
LOC_Os02g17930Os.45422.1.S1_x_at2/112+10382365..10384763hypothetical protein
LOC_Os02g17940Os.10521.1.S1_at11/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_x_at3/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_at1/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2659.1.S1_at--228--4771Chr02:10362626..10362650 (25 bp)
GCTGCAGTCACCGATCTGTGGGCAT
LOC_Os02g17890
OsAffx.2659.1.S1_at--956--8651Chr02:10362610..10362634 (25 bp)
TGTGGGCATCGTCCCATCACCAAGC
LOC_Os02g17890
OsAffx.2659.1.S1_at--334--7111Chr02:10362305..10362602 (25 bp)
GTCACCATCACCGAACAGAGGACTA
LOC_Os02g17890
OsAffx.2659.1.S1_at--133--8131Chr02:10362286..10362310 (25 bp)
GGACTAGGCGGCGAACTGCAACTCC
LOC_Os02g17890
OsAffx.2659.1.S1_at--567--5151Chr02:10362269..10362293 (25 bp)
GCAACTCCCGAGATTACCAGCAATG
LOC_Os02g17890
OsAffx.2659.1.S1_at--803--6551Chr02:10362258..10362282 (25 bp)
GATTACCAGCAATGGATCTACCCCT
LOC_Os02g17890
OsAffx.2659.1.S1_at--115--9271Chr02:10362234..10362258 (25 bp)
TCCTGAGCCCATTGGCGTCAAATTC
LOC_Os02g17890
OsAffx.2659.1.S1_at--113--10871Chr02:10362223..10362247 (25 bp)
TTGGCGTCAAATTCGCTTCTCTTGA
LOC_Os02g17890
OsAffx.2659.1.S1_at--512--4911Chr02:10362209..10362233 (25 bp)
GCTTCTCTTGATCTTGTTGCAGTTG
LOC_Os02g17890
OsAffx.2659.1.S1_at--655--5031Chr02:10362191..10362215 (25 bp)
GCAGTTGTCACCGTTGCAATCGTCG
LOC_Os02g17890
OsAffx.2659.1.S1_at--677--7771Chr02:10362158..10362182 (25 bp)
GGTGCTATCGTCACGTGCAGTAGAG
LOC_Os02g17890
Target Sequence 
GCTGCAGTCACCGATCTGTGGGCATCGTCCCATCACCAAGCTGCGATCGTCACCATCACCGAACAGAGGACTAGGCGGCG
AACTGCAACTCCCGAGATTACCAGCAATGGATCTACCCCTCCTGAGCCCATTGGCGTCAAATTCGCTTCTCTTGATCTTG
TTGCAGTTGTCACCGTTGCAATCGTCGCCGTCGTTGGTGCTATCGTCACGTGCAGTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis