Browse Element(s) Details

Os.10137.1.S1_a_at

Description

gb:AK058599.1
DB_XREF= gi:32968617
TID=Os.10137.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU082548(E60543) corresponds to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome II BAC F2I9 genomic sequence, unknown protein. (AC005560) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H06, full insert sequence.
FL= gb:AK058599.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07830	11/11	Clathrin assembly protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07780	OsAffx.15303.1.S1_at	11/11	6	+	3772673..3775481	Synaptobrevin family protein, expressed
LOC_Os06g07780	OsAffx.15303.1.S1_s_at	11/11	6	+	3772673..3775481	Synaptobrevin family protein, expressed
LOC_Os06g07780	Os.3539.1.S1_at	10/11	6	+	3772673..3775481	Synaptobrevin family protein, expressed
LOC_Os06g07790	Os.33661.2.S1_at	5/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790	Os.51788.2.S1_at	2/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790	OsAffx.2816.1.S1_at	2/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07800	OsAffx.27496.2.S1_x_at	11/11	6	+	3787063..3788805	hypothetical protein
LOC_Os06g07800	OsAffx.27496.2.S1_at	11/11	6	+	3787063..3788805	hypothetical protein
LOC_Os06g07810	OsAffx.27496.1.S1_at	11/11	6	+	3791148..3793775	hAT family dimerisation domain containing protein
LOC_Os06g07810	OsAffx.27496.1.S1_x_at	11/11	6	+	3791148..3793775	hAT family dimerisation domain containing protein
LOC_Os06g07820	Os.16410.1.S1_s_at	11/11	6	+	3794469..3797624	BSD domain containing protein, expressed
LOC_Os06g07830	Os.10137.1.S1_a_at	11/11	6	+	3800241..3806767	Clathrin assembly protein, putative, expressed
LOC_Os06g07840	OsAffx.4759.1.S1_at	11/11	6	+	3809432..3809635	hypothetical protein
LOC_Os06g07850	Os.46012.2.S1_x_at	11/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.46012.3.S1_x_at	7/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.27088.1.A1_x_at	6/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.54691.1.S1_x_at	3/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07860	Os.3545.1.S1_at	11/11	6	+	3822022..3826345	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07869	OsAffx.27501.1.S1_at	9/11	6	+	3827205..3828962	hypothetical protein
LOC_Os06g07878	Os.4216.1.S1_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.1.S1_a_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.2.S1_x_at	6/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005488	molecular_function	binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10137.1.S1_a_at--33--507	1	Chr06:3800785..3800809 (25 bp)	GCAGCAGGCCTTCATGCTCCAGCAG	LOC_Os06g07830
Os.10137.1.S1_a_at--638--511	1	Chr06:3800525..3800549 (25 bp)	GCACTACTTCCAATGTCGATTCTTT	LOC_Os06g07830
Os.10137.1.S1_a_at--92--299	1	Chr06:3800514..3800538 (25 bp)	AATGTCGATTCTTTTTTGGCTGGAA	LOC_Os06g07830
Os.10137.1.S1_a_at--1053--311	2	Chr08:22999965..22999989 (24 bp)	AATTTGTAGCTTTCTCTCATTGTTG	NONE
Os.10137.1.S1_a_at--405--489	1	Chr06:3800480..3800504 (25 bp)	GCTTTCTCTCATTGTTGATGGTTTG	LOC_Os06g07830
Os.10137.1.S1_a_at--497--625	1	Chr06:3800464..3800488 (25 bp)	GATGGTTTGTAGCACACACAGGTAG	LOC_Os06g07830
Os.10137.1.S1_a_at--554--861	1	Chr06:3800420..3800444 (25 bp)	TGGTGTTCGTCCGATTCGGACACGT	LOC_Os06g07830
Os.10137.1.S1_a_at--686--563	1	Chr06:3800402..3800426 (25 bp)	GACACGTCACACGTAGGTGCTTGGG	LOC_Os06g07830
Os.10137.1.S1_a_at--956--769	2	Chr11:4447673..4447692 (20 bp)	GGGTAATGTATGTACGTATGCATGT	NONE
Os.10137.1.S1_a_at--655--19	1	Chr06:3800327..3800351 (25 bp)	ATTTCTTCATGTGGGTGGGTGATTC	LOC_Os06g07830
Os.10137.1.S1_a_at--460--857	1	Chr06:3800285..3800309 (25 bp)	TGGATTATTCATGGACATTGATCGA	LOC_Os06g07830

Target Sequence

GCAGCAGGCCTTCATGCTCCAGCAGCAGATGATGATGGCCGCCGCCGCCGCCGCCGCCGCGGCGCCCCCGCCTCAGGTGT
TCCACCACCACCAGCAGCAGCAGCAGCATCTCCAGGCCAACCCGGCGAACCCGTTCGGCAACCCGTTCGCCGCCGCCGCA
GCCGCCCACCACCCTTACGGCGCCGCCGCCGCCGCCGGCAACGGCTACACGGGGCTCATATGATGATCATCATCCAGCTC
CGGCGATGTCGGTCGTCGTCGCACTACTTCCAATGTCGATTCTTTTTTGGCTGGAAAAATTTGTAGCTTTCTCTCATTGT
TGATGGTTTGTAGCACACACAGGTAGAAGAAGAAGAAGAATTCGGTGGTGTTCGTCCGATTCGGACACGTCACACGTAGG
TGCTTGGGGTAATGTATGTACGTATGCATGTATGTATATGGGTATGGGTATTTTTGGTATTTCTTCATGTGGGTGGGTGA
TTCGGGATAAGATTAATTATTGGATTATTCATGGACATTGATCGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis