Browse Element(s) Details


Os.33661.2.S1_at

Description gb:NM_185679.1
DB_XREF= gi:34898443
TID=Os.33661.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33661 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC F13B15 genomic sequence, putative non-LTR retroelement reverse transcriptase. (AC006300) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC F13B15 genomic sequence, putative non-LTR retroelement reverse transcriptase. (AC006300) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g077905/11retrotransposon protein, putative, unclassified, expressed
LOC_Os02g310102/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07760Os.44735.1.S1_at9/116+3758841..3761129expressed protein
LOC_Os06g07770OsAffx.22571.2.S1_x_at11/116+3761999..3771827expressed protein
LOC_Os06g07780OsAffx.15303.1.S1_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780OsAffx.15303.1.S1_s_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780Os.3539.1.S1_at10/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07790Os.33661.2.S1_at5/116+3778654..3784952retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790Os.51788.2.S1_at2/116+3778654..3784952retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790OsAffx.2816.1.S1_at2/116+3778654..3784952retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07800OsAffx.27496.2.S1_x_at11/116+3787063..3788805hypothetical protein
LOC_Os06g07800OsAffx.27496.2.S1_at11/116+3787063..3788805hypothetical protein
LOC_Os06g07810OsAffx.27496.1.S1_at11/116+3791148..3793775hAT family dimerisation domain containing protein
LOC_Os06g07810OsAffx.27496.1.S1_x_at11/116+3791148..3793775hAT family dimerisation domain containing protein
LOC_Os06g07820Os.16410.1.S1_s_at11/116+3794469..3797624BSD domain containing protein, expressed
LOC_Os06g07830Os.10137.1.S1_a_at11/116+3800241..3806767Clathrin assembly protein, putative, expressed
LOC_Os06g07840OsAffx.4759.1.S1_at11/116+3809432..3809635hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33661.2.S1_at--73--2813Chr11:7113269..7113288 (20 bp)
AAGATGCCTTTCACATACTTGGGTT
NONE
Os.33661.2.S1_at--94--5851Chr06:3784325..3784349 (25 bp)
GACCTATCTCCAATCTTTCAGAAAG
LOC_Os06g07790
Os.33661.2.S1_at--1051--7131Chr06:3784366..3784390 (25 bp)
GTCTTGGAAGAGCTGCCACTTGACT
LOC_Os06g07790
Os.33661.2.S1_at--876--7152Chr06:3784426..3784450 (25 bp)
GTCTAGTGCACCCATGTATGCTATG
LOC_Os06g07790
Os.33661.2.S1_at--238--832Chr06:3784448..3784472 (25 bp)
ATGGTTTTCTACCTTTTGCTTGAGG
LOC_Os06g07790
Os.33661.2.S1_at--174--7371Chr06:3785357..3785381 (25 bp)
GTGACAACTAACACGTCTCCAGTAG
NONE
Os.33661.2.S1_at--580--7171Chr06:3785371..3785395 (25 bp)
GTCTCCAGTAGTTTTGTTGCACGGT
NONE
Os.33661.2.S1_at--507--2391Chr06:3785683..3785707 (25 bp)
AAACTCGGGTCAACGAAGCAGTGAT
NONE
Os.33661.2.S1_at--866--1111Chr06:3785702..3785726 (25 bp)
AGTGATGGCGGCATCCCTCGCGGTT
NONE
Os.33661.2.S1_at--891--7891Chr06:3785723..3785747 (25 bp)
GGTTCATCTCTCCAAGCTACAAGAT
NONE
Os.33661.2.S1_at--81--6251Chr06:3785753..3785777 (25 bp)
GATGGAGTTGATTGTCGCACCACCA
NONE
Target Sequence 
AAGATGCCTTTCACATACTTGGGTTTGCCTATGGGGGTTGACAGAATTGGGATGAGAGACCTATCTCCAATCTTTCAGAA
AGTTGAGAAGAGACTTCAGTCTTGGAAGAGCTGCCACTTGACTTATGGCGGCAGGGGGATCAAGATTAACTCATATTTGT
CTAGTGCACCCATGTATGCTATGGTTTTCTACCTTTTGCTTGAGGGGGAAAGGATGAACGTGACAACTAACACGTCTCCA
GTAGTTTTGTTGCACGGTAACAGAGTAGCTGCAGGGGGCAGTCACATTTTGGTGCAAATGTTGTGTTGGGTTCATGATGG
GGAAGGAAACTGGAGAGCCAAGTCTATGAGGCGAAGATTTGGGATAAACTCGGGTCAACGAAGCAGTGATGGCGGCATCC
CTCGCGGTTCATCTCTCCAAGCTACAAGATGTGGCGATGGAGTTGATTGTCGCACCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33661.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis