Browse Element(s) Details

OsAffx.4759.1.S1_at

Description

tigr:9634.m00718
TID=OsAffx.4759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07840	11/11	hypothetical protein
LOC_Os03g42569	3/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07790	Os.33661.2.S1_at	5/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790	Os.51788.2.S1_at	2/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07790	OsAffx.2816.1.S1_at	2/11	6	+	3778654..3784952	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07800	OsAffx.27496.2.S1_x_at	11/11	6	+	3787063..3788805	hypothetical protein
LOC_Os06g07800	OsAffx.27496.2.S1_at	11/11	6	+	3787063..3788805	hypothetical protein
LOC_Os06g07810	OsAffx.27496.1.S1_at	11/11	6	+	3791148..3793775	hAT family dimerisation domain containing protein
LOC_Os06g07810	OsAffx.27496.1.S1_x_at	11/11	6	+	3791148..3793775	hAT family dimerisation domain containing protein
LOC_Os06g07820	Os.16410.1.S1_s_at	11/11	6	+	3794469..3797624	BSD domain containing protein, expressed
LOC_Os06g07830	Os.10137.1.S1_a_at	11/11	6	+	3800241..3806767	Clathrin assembly protein, putative, expressed
LOC_Os06g07840	OsAffx.4759.1.S1_at	11/11	6	+	3809432..3809635	hypothetical protein
LOC_Os06g07850	Os.46012.2.S1_x_at	11/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.46012.3.S1_x_at	7/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.27088.1.A1_x_at	6/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.54691.1.S1_x_at	3/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07860	Os.3545.1.S1_at	11/11	6	+	3822022..3826345	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07869	OsAffx.27501.1.S1_at	9/11	6	+	3827205..3828962	hypothetical protein
LOC_Os06g07878	Os.4216.1.S1_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.1.S1_a_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.2.S1_x_at	6/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07887	OsAffx.27499.3.S1_x_at	11/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	OsAffx.13617.1.S1_x_at	2/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	Os.51833.1.S1_x_at	1/11	6	+	3833300..3835514	Exostosin family protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4759.1.S1_at--795--549	1	Chr06:3809527..3809551 (25 bp)	GACACAAAAGTCAGAATTGGGTAAA	LOC_Os06g07840
OsAffx.4759.1.S1_at--598--317	1	Chr06:3809541..3809565 (25 bp)	AATTGGGTAAAGCATCTTCTGTGCA	LOC_Os06g07840
OsAffx.4759.1.S1_at--373--1085	1	Chr06:3809543..3809567 (25 bp)	TTGGGTAAAGCATCTTCTGTGCATG	LOC_Os06g07840
OsAffx.4759.1.S1_at--845--769	1	Chr06:3809545..3809569 (25 bp)	GGGTAAAGCATCTTCTGTGCATGCA	LOC_Os06g07840
OsAffx.4759.1.S1_at--237--705	2	Chr06:3809547..3809571 (25 bp)	GTAAAGCATCTTCTGTGCATGCAAT	LOC_Os06g07840
OsAffx.4759.1.S1_at--716--271	2	Chr06:3809550..3809574 (25 bp)	AAGCATCTTCTGTGCATGCAATAGA	LOC_Os06g07840
OsAffx.4759.1.S1_at--460--497	2	Chr06:3809552..3809576 (25 bp)	GCATCTTCTGTGCATGCAATAGACA	LOC_Os06g07840
OsAffx.4759.1.S1_at--537--957	1	Chr06:3809555..3809579 (25 bp)	TCTTCTGTGCATGCAATAGACAAGC	LOC_Os06g07840
OsAffx.4759.1.S1_at--275--905	1	Chr06:3809562..3809586 (25 bp)	TGCATGCAATAGACAAGCACCAGCA	LOC_Os06g07840
OsAffx.4759.1.S1_at--984--519	1	Chr06:3809567..3809591 (25 bp)	GCAATAGACAAGCACCAGCACAGGG	LOC_Os06g07840
OsAffx.4759.1.S1_at--782--435	1	Chr06:3809581..3809605 (25 bp)	CCAGCACAGGGCCATTGAGCAGCAG	LOC_Os06g07840

Target Sequence

GACACAAAAGTCAGAATTGGGTAAAGCATCTTCTGTGCATGCAATAGACAAGCACCAGCACAGGGCCATTGAGCAGCAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis