Browse Element(s) Details


Os.51788.2.S1_at

Description gb:AK107782.1
DB_XREF= gi:32992991
TID=Os.51788.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C08, full insert sequence.
FL= gb:AK107782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3413011/11expressed protein
LOC_Os06g077902/11retrotransposon protein, putative, unclassified, expressed
LOC_Os12g075101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34110Os.21034.1.S1_at11/115+20070784..20072848myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g34120OsAffx.12939.1.S1_at8/115+20081181..20083489hypothetical protein
LOC_Os05g34120OsAffx.12939.2.S1_at3/115+20081181..20083489hypothetical protein
LOC_Os05g34130Os.51788.2.S1_at11/115+20095069..20095865expressed protein
LOC_Os05g34140NANA5+20098495..20102020retrotransposon protein, putative, unclassified
LOC_Os05g34150Os.57507.1.S1_x_at10/115+20109210..20110617Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os05g34160Os.50748.1.S1_at10/115+20113860..20115430mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51788.2.S1_at--869--1592Chr07:27147463..27147717 (25 bp)
AGCTCCGGTGGAGGCTAAGCTCCCG
NONE
Os.51788.2.S1_at--250--8551Chr05:20095609..20095633 (25 bp)
TGGAGGCTAAGCTCCCGCACCGCTT
LOC_Os05g34130
Os.51788.2.S1_at--184--10711Chr05:20095526..20095550 (25 bp)
TTGCTTCTACGCCAAGCCCCGAGGA
LOC_Os05g34130
Os.51788.2.S1_at--1087--3711Chr05:20095301..20095325 (25 bp)
CTCTAACCCGCTTCGTCGAGTTCGT
LOC_Os05g34130
Os.51788.2.S1_at--1152--7714Chr10:6631289..6631313 (25 bp)
GGGTGGAGATTTATATTCTTCTCTC
NONE
Os.51788.2.S1_at--691--10192Chr10:6631300..6631324 (25 bp)
TATATTCTTCTCTCGATTTTAGGGT
NONE
Os.51788.2.S1_at--227--10572Chr10:6631304..6631328 (25 bp)
TTCTTCTCTCGATTTTAGGGTGGTT
NONE
Os.51788.2.S1_at--313--3333Chr06:25218215..25218239 (25 bp)
CTCTCGATTTTAGGGTGGTTACTGT
NONE
Os.51788.2.S1_at--99--10474Chr06:25218233..25218721 (25 bp)
TTACTGTAAAATTTGGACTTCTTTG
NONE
Os.51788.2.S1_at--30--8532Chr07:27144587..27144611 (25 bp)
TGGACTTCTTTGTAAATTGATAAAC
NONE
Os.51788.2.S1_at--1120--12Chr10:6631355..6631379 (25 bp)
ATTGATAAACACGTGAGGGCTGAAA
NONE
Target Sequence 
AGCTCCGGTGGAGGCTAAGCTCCCGCACCGCTTCAGATCCACGCCGCCGCCACCACCTCGAAGGAGCGCTGTCGCCGCCG
TCTTCCCACCGTTGCTTCTACGCCAAGCCCCGAGGATGCCGCTCGCCCGACGCCGGATCCGTCGTCGAGACACTGCCGGG
GGTGGAGGGGCCCGGTGAGCCCTCGCGTCGCCGCAGCCCTCCGCGCCCTCATCGCCGGCCAGAAGTGGAGGGGCCGGTGA
GATCTCGCGCCGCCGCCGCCGAACTCGTCACCATCTCCCACTCCTGTGCCCCCGCGTCGCCGTCTCCCGCCCCGCGCTCT
AACCCGCTTCGTCGAGTTCGTCGCCGTCCTTCGCTGGAGGAGAGGAGAGCCGGCGCCGGCGGAGGAGAGGAGGGGAGCCA
GCGCCGGCGGAGAGAGGAGGGGAGAGAGCCGGCGTGACCGTGAGGGAGGAGTAGTTGGGGGATTTGGGTAAAGTAGTATG
GGTGGAGATTTATATTCTTCTCTCGATTTTAGGGTGGTTACTGTAAAATTTGGACTTCTTTGTAAATTGATAAACACGTG
AGGGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51788.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis