Browse Element(s) Details


Os.21034.1.S1_at

Description gb:BQ906729
DB_XREF= gi:22305507
DB_XREF=M018C10
CLONE=M018C10
TID=Os.21034.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21034 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3411011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34070Os.28077.1.S1_at11/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.1.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.2.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34080NANA5+20051083..20053709retrotransposon protein, putative, unclassified
LOC_Os05g34090NANA5+20054853..20061009retrotransposon protein, putative, unclassified
LOC_Os05g34100NANA5+20065894..20066715hypothetical protein
LOC_Os05g34110Os.21034.1.S1_at11/115+20070784..20072848myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g34120OsAffx.12939.1.S1_at8/115+20081181..20083489hypothetical protein
LOC_Os05g34120OsAffx.12939.2.S1_at3/115+20081181..20083489hypothetical protein
LOC_Os05g34130Os.51788.2.S1_at11/115+20095069..20095865expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21034.1.S1_at--740--4811Chr05:20071321..20071345 (25 bp)
GCTCTGCTCATCCTGGTGACTGTCA
LOC_Os05g34110
Os.21034.1.S1_at--22--8951Chr05:20071305..20071329 (25 bp)
TGACTGTCACTCACTTGGTTCTTGA
LOC_Os05g34110
Os.21034.1.S1_at--141--371Chr05:20071185..20071209 (25 bp)
ATAATTGGCAAGGACCCACTCCAGG
LOC_Os05g34110
Os.21034.1.S1_at--397--151Chr05:20071108..20071132 (25 bp)
ATTAGGCATGTCTTGGTGAGCTCAG
LOC_Os05g34110
Os.21034.1.S1_at--1117--9631Chr05:20071087..20071111 (25 bp)
TCAGATCATCTTCCGAGTGGCCAAA
LOC_Os05g34110
Os.21034.1.S1_at--748--10451Chr05:20071050..20071074 (25 bp)
TTAGCTTCTACCTTAGTGTTTTGAG
LOC_Os05g34110
Os.21034.1.S1_at--809--1471Chr05:20071015..20071039 (25 bp)
AGCAAGGGTTTCAGAGCAACTCGAA
LOC_Os05g34110
Os.21034.1.S1_at--948--3071Chr05:20070958..20070982 (25 bp)
AATCAGCGGTAAATTGCCTCTCGTT
LOC_Os05g34110
Os.21034.1.S1_at--118--6811Chr05:20070936..20070960 (25 bp)
GTTTTCCTCGTAGCCGTGAGATGAA
LOC_Os05g34110
Os.21034.1.S1_at--448--6431Chr05:20070886..20070910 (25 bp)
GATCTTCTTGAGTTGTGCTAGTACA
LOC_Os05g34110
Os.21034.1.S1_at--106--3471Chr05:20070863..20070887 (25 bp)
CAGTGATGCTTTATGTTCTTGTACA
LOC_Os05g34110
Target Sequence 
GCTCTGCTCATCCTGGTGACTGTCACTCACTTGGTTCTTGAGTGATACAACTCCAACCAAACAAGTGATGCAATCAACTG
CCACNTGAGAAGATTGCATGGGTGTAANTGGCAAGTGTGATATAGGCAGAGGATTGAATAATTGGCAAGGACCCACTCCA
GGAGATGAATAATTCTGAGGATTAAGCTTTATTTGTTGTGAATGAATGATGATAATTAGGCATGTCTTGGTGAGCTCAGA
TCATCTTCCGAGTGGCCAAAGAGATTCATAGCTTAGCTTCTACCTTAGTGTTTTGAGGAGTATGTGTAGCAAGGGTTTCA
GAGCAACTCGAATTGGAGTTTGTTTGTAGTAGCAATCACTTGTAAATCAGCGGTAAATTGCCTCTCGTTTTCCTCGTAGC
CGTGAGATGAAAGAAAAAAAAAAGAGAGAGAAGAAGATCTTCTTGAGTTGTGCTAGTACAGTGATGCTTTATGTTCTTGT
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis