Browse Element(s) Details


Os.28077.1.S1_at

Description gb:AK101609.1
DB_XREF= gi:32986818
TID=Os.28077.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23495 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052B11, full insert sequence.
FL= gb:AK101609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3407011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed
LOC_Os05g34060OsAffx.4513.1.S1_at11/115+20038124..20038535hypothetical protein
LOC_Os05g34070Os.28077.1.S1_at11/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.1.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.2.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34080NANA5+20051083..20053709retrotransposon protein, putative, unclassified
LOC_Os05g34090NANA5+20054853..20061009retrotransposon protein, putative, unclassified
LOC_Os05g34100NANA5+20065894..20066715hypothetical protein
LOC_Os05g34110Os.21034.1.S1_at11/115+20070784..20072848myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28077.1.S1_at--751--1671Chr05:20046121..20046145 (25 bp)
AGCCGTTCCAGAGTTGCTGTTTTTA
LOC_Os05g34070
Os.28077.1.S1_at--1101--8391Chr05:20046292..20046316 (25 bp)
GGCCCAGTGCACGACTTCAATGTGA
LOC_Os05g34070
Os.28077.1.S1_at--663--9731Chr05:20046308..20046332 (25 bp)
TCAATGTGAGTCCTGGTGGCTTCAA
LOC_Os05g34070
Os.28077.1.S1_at--954--7731Chr05:20046361..20046385 (25 bp)
GGTGTTGGTTTTATGCAGTCTGCTA
LOC_Os05g34070
Os.28077.1.S1_at--777--10571Chr05:20046405..20046429 (25 bp)
TTCTGTGTACTTTGGCCAACCCGAT
LOC_Os05g34070
Os.28077.1.S1_at--347--10431Chr05:20046430..20046454 (25 bp)
TTATCTATGGGCTCCTCTTCTGGAA
LOC_Os05g34070
Os.28077.1.S1_at--459--1091Chr05:20046470..20046494 (25 bp)
AGTGGCCAACTCCAGCAATGATATA
LOC_Os05g34070
Os.28077.1.S1_at--47--8831Chr05:20046524..20047052 (25 bp)
TGATTTCTCAGGTTCCGGTTTACCA
LOC_Os05g34070
Os.28077.1.S1_at--185--1151Chr05:20047052..20047076 (25 bp)
AGTCCTTCAACCATGGCTGAGAGAT
LOC_Os05g34070
Os.28077.1.S1_at--116--1291Chr05:20047073..20047097 (25 bp)
AGATCCTACTTGCTGGAATGCGCCA
LOC_Os05g34070
Os.28077.1.S1_at--510--7211Chr05:20047165..20047189 (25 bp)
GTCGAACTTCCGTGTAGCGTCAAAA
LOC_Os05g34070
Target Sequence 
AGCCGTTCCAGAGTTGCTGTTTTTAAGGACACTGAAAAGGATCGTAGTGATCCTGACTATGATCGTAACTACAAGAGGTA
TGTTAGGGGCCCAGTGCACGACTTCAATGTGAGTCCTGGTGGCTTCAATTTTGTTGTGCCACAGTTTATGCAGTATGGTG
TTGGTTTTATGCAGTCTGCTAATATGTCAAGAAACCAACCTTCTGTGTACTTTGGCCAACCCGATTTATCTATGGGCTCC
TCTTCTGGAACTGCTGTCTACCCACAGTGGCCAACTCCAGCAATGATATACCCCCATTGCTATGACAATCTTGGGCATAT
GATTTCTCAGGTTCCGGTTTACCAGTCCTTCAACCATGGCTGAGAGATCCTACTTGCTGGAATGCGCCAAGTTTGTTAAA
ACTTGCTATGTTGTGTTGTCATATGTTGAGTCCATTTGTAGTCAAACTTTCCCAGCGTCGAACTTCCGTGTAGCGTCAAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis