Browse Element(s) Details


Os.52159.1.S1_at

Description gb:AK065380.1
DB_XREF= gi:32975398
TID=Os.52159.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020B13, full insert sequence.
FL= gb:AK065380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3404011/11FAD dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34000OsAffx.27148.1.S1_x_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34000Os.55557.1.S1_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34010Os.34673.1.S1_at11/115+20004058..20008382POT family protein, expressed
LOC_Os05g34020OsAffx.14953.1.S1_at11/115+20009945..20011105hypothetical protein
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed
LOC_Os05g34060OsAffx.4513.1.S1_at11/115+20038124..20038535hypothetical protein
LOC_Os05g34070Os.28077.1.S1_at11/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.1.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.2.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34080NANA5+20051083..20053709retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52159.1.S1_at--728--911Chr05:20021225..20021247 (23 bp)
AGGCATTACTTCATGGTGTCGAGAC
LOC_Os05g34040
Os.52159.1.S1_at--6--5991Chr05:20020085..20020108 (24 bp)
GAGACAAGAACAAGCTCCCCATTGC
LOC_Os05g34040
Os.52159.1.S1_at--352--4791Chr05:20020072..20020096 (25 bp)
GCTCCCCATTGCAAATTTCACGAAA
LOC_Os05g34040
Os.52159.1.S1_at--480--5951Chr05:20020032..20020056 (25 bp)
GAGCACATCACTGCAAGGGCTGTAT
LOC_Os05g34040
Os.52159.1.S1_at--195--10471Chr05:20019932..20019956 (25 bp)
TTAGCCAAACAGCTTTCTCTATTCC
LOC_Os05g34040
Os.52159.1.S1_at--406--4891Chr05:20019921..20019945 (25 bp)
GCTTTCTCTATTCCATGGCGATATA
LOC_Os05g34040
Os.52159.1.S1_at--781--6091Chr05:20019896..20019920 (25 bp)
GAGTCAACTCTTGGCAAAGCACAAA
LOC_Os05g34040
Os.52159.1.S1_at--862--111Chr05:20019796..20019820 (25 bp)
ATTCACCGTGGTAGCAAATTGCCTA
LOC_Os05g34040
Os.52159.1.S1_at--4--991Chr05:20019671..20019695 (25 bp)
AGGAGTCTATACCATGTCGCTATGT
LOC_Os05g34040
Os.52159.1.S1_at--323--6191Chr05:20019594..20019618 (25 bp)
GAGGACGGCATTTTAATCTTGTAGA
LOC_Os05g34040
Os.52159.1.S1_at--270--6551Chr05:20019571..20019595 (25 bp)
GATTATTCAATAATGCTGCCCACAA
LOC_Os05g34040
Target Sequence 
AGGCATTACTTCATGGTGTCGAGACAAGAACAAGCTCCCCATTGCAAATTTCACGAAATACCGGTACATATGAGAGCACA
TCACTGCAAGGGCTGTATCCTATTGGGGAAGGTGCTGGCTATGCAGGGGGTATATTAAGTGCTTCTGTGGATGGTATGTA
TTGTGGTTTTGCTTTAGCCAAACAGCTTTCTCTATTCCATGGCGATATAGAGTCAACTCTTGGCAAAGCACAAAACCAAA
AAGGCTTCGTAAAATATTGAGTATGGATGCGTAATTAGTTGATTGTAGGTATCAGATATTGAAAGATAAATTCACCGTGG
TAGCAAATTGCCTAGGAAAACTCCTTATGTAGAGAAGTTGTAATGAGTGCAGTCATAGAAAATATTGAGCGAGTATGTAC
TATGTAAATGACATCAAAGGTGCTATAGGATAATAGGAGTCTATACCATGTCGCTATGTAATAAACTAGTGAAATTTCTA
GGCTAGGAATAACAATATAATAATTAACTTAGAGGACGGCATTTTAATCTTGTAGATTATTCAATAATGCTGCCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis