Browse Element(s) Details


OsAffx.4513.1.S1_at

Description tigr:9633.m03150
TID=OsAffx.4513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3406011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed
LOC_Os05g34060OsAffx.4513.1.S1_at11/115+20038124..20038535hypothetical protein
LOC_Os05g34070Os.28077.1.S1_at11/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.1.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.2.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34080NANA5+20051083..20053709retrotransposon protein, putative, unclassified
LOC_Os05g34090NANA5+20054853..20061009retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4513.1.S1_at--358--6191Chr05:20038194..20038218 (25 bp)
GAGGACAAGCGTGGTGGCCACCTCC
LOC_Os05g34060
OsAffx.4513.1.S1_at--989--7531Chr05:20038207..20038227 (21 bp)
GTGGCCACCTCCGGTGTTGGTGGTG
LOC_Os05g34060
OsAffx.4513.1.S1_at--472--4691Chr05:20038411..20038435 (25 bp)
GCAGCGAGGTAGTGGTTGCCGTGGA
LOC_Os05g34060
OsAffx.4513.1.S1_at--495--7911Chr05:20038424..20038448 (25 bp)
GGTTGCCGTGGAGGTCATGTCACCT
LOC_Os05g34060
OsAffx.4513.1.S1_at--359--6691Chr05:20038425..20038449 (25 bp)
GTTGCCGTGGAGGTCATGTCACCTC
LOC_Os05g34060
OsAffx.4513.1.S1_at--826--7511Chr05:20038431..20038455 (25 bp)
GTGGAGGTCATGTCACCTCCGCTGC
LOC_Os05g34060
OsAffx.4513.1.S1_at--331--8551Chr05:20038432..20038456 (25 bp)
TGGAGGTCATGTCACCTCCGCTGCC
LOC_Os05g34060
OsAffx.4513.1.S1_at--1096--4771Chr05:20038451..20038475 (25 bp)
GCTGCCGCACTCAGATGCCGAGATG
LOC_Os05g34060
OsAffx.4513.1.S1_at--1022--9171Chr05:20038453..20038477 (25 bp)
TGCCGCACTCAGATGCCGAGATGTA
LOC_Os05g34060
OsAffx.4513.1.S1_at--1067--4511Chr05:20038454..20038478 (25 bp)
GCCGCACTCAGATGCCGAGATGTAC
LOC_Os05g34060
OsAffx.4513.1.S1_at--680--4231Chr05:20038468..20038492 (25 bp)
CCGAGATGTACGAGTATGATGAGGA
LOC_Os05g34060
Target Sequence 
GAGGACAAGCGTGGTGGCCACCTCCGGTGTTGGTGGTGGTCGCCGGAGATGGTGGCAGCGAGGTAGTGGTTGCCGTGGAG
GTCATGTCACCTCCGCTGCCGCACTCAGATGCCGAGATGTACGAGTATGATGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis