Browse Element(s) Details


Os.5535.2.S1_x_at

Description gb:AK073142.1
DB_XREF= gi:32983165
TID=Os.5535.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024D10, full insert sequence.
FL= gb:AK058751.1 gb:AK073142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3405011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34010Os.34673.1.S1_at11/115+20004058..20008382POT family protein, expressed
LOC_Os05g34020OsAffx.14953.1.S1_at11/115+20009945..20011105hypothetical protein
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed
LOC_Os05g34060OsAffx.4513.1.S1_at11/115+20038124..20038535hypothetical protein
LOC_Os05g34070Os.28077.1.S1_at11/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.1.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34070OsAffx.27325.2.S1_x_at1/115+20043959..20047277expressed protein
LOC_Os05g34080NANA5+20051083..20053709retrotransposon protein, putative, unclassified
LOC_Os05g34090NANA5+20054853..20061009retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5535.2.S1_x_at--246--6651Chr05:20030222..20030246 (25 bp)
GTTGTTGTTCTTGTTGACGGTGTGA
LOC_Os05g34050
Os.5535.2.S1_x_at--90--7471Chr05:20030203..20030227 (25 bp)
GTGTGAGATATGTCACTTACTCCTG
LOC_Os05g34050
Os.5535.2.S1_x_at--721--1371Chr05:20030164..20030188 (25 bp)
AGAGCTCCAGCCCACATCTTGTGAA
LOC_Os05g34050
Os.5535.2.S1_x_at--857--9791Chr05:20030138..20030162 (25 bp)
TAAGCGGCTGGGTTGTTCGCCAAAA
LOC_Os05g34050
Os.5535.2.S1_x_at--264--6411Chr05:20030086..20030110 (25 bp)
GATCTGATGCTGTTTCCTAACCAAG
LOC_Os05g34050
Os.5535.2.S1_x_at--734--9831Chr05:20030058..20030082 (25 bp)
TAAACTTCCTATGCACTCAGGCTGA
LOC_Os05g34050
Os.5535.2.S1_x_at--718--6451Chr05:20029958..20029982 (25 bp)
GATAATCGGGTTCGTTTGCTGTACC
LOC_Os05g34050
Os.5535.2.S1_x_at--454--10711Chr05:20029943..20029967 (25 bp)
TTGCTGTACCTCTAGCTGTAACGGT
LOC_Os05g34050
Os.5535.2.S1_x_at--1052--2691Chr05:20029794..20029818 (25 bp)
AAGCTACAGTACATCAGGTTGCTGA
LOC_Os05g34050
Os.5535.2.S1_x_at--92--10375Chr05:10672844..10673308 (25 bp)
TTTTTATGCTTTGATCTGGATACTA
NONE
Os.5535.2.S1_x_at--107--6111Chr05:20029664..20029688 (25 bp)
GAGTCTGGTCAACATATCTATGAGA
LOC_Os05g34050
Target Sequence 
GTTGTTGTTCTTGTTGACGGTGTGAGATATGTCACTTACTCCTGCACGCTTCCTTTCAAGAGCTCCAGCCCACATCTTGT
GAACTAAGCGGCTGGGTTGTTCGCCAAAAACTGACAGATGAATAGATTTATACAATGATCTGATGCTGTTTCCTAACCAA
GGACTAAACTTCCTATGCACTCAGGCTGAGGTAATTCAAGTTTGTCGAAGGTTCGGAGTGATGAGTGCGAGTTTAGTTAA
TGTATGCAGTTTTTGCAGTGCTGTGATAATCGGGTTCGTTTGCTGTACCTCTAGCTGTAACGGTGATGTAATCATGTAAT
ACTGTTTGATCGTTGAGNTATAAGTGCAACTAGTAATATGGGTAGTCGAGAACNCGTGCAGAATATACATGCCTTTTTTT
ACCTTAGTTTCAATGAATATCATAAACAAAGCTACAGTACATCAGGTTGCTGAAAGGTATTTTTTATGCTTTGATCTGGA
TACTATTTAGATTATGTTTAGGCTGAATTTGTTAGGAATTTTGTTTGTAATGAATTCAGGAACTAGCTAGAAAGAATTGA
GTCTGGTCAACATATCTATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5535.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis