Browse Element(s) Details


Os.34673.1.S1_at

Description gb:AK070558.1
DB_XREF= gi:32980582
TID=Os.34673.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023060I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060I20, full insert sequence.
FL= gb:AK070558.1 gb:AK119621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3401011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33980NANA5+19977879..19983840retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990Os.28943.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g34000OsAffx.27148.1.S1_x_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34000Os.55557.1.S1_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34010Os.34673.1.S1_at11/115+20004058..20008382POT family protein, expressed
LOC_Os05g34020OsAffx.14953.1.S1_at11/115+20009945..20011105hypothetical protein
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34673.1.S1_at--291--9931Chr05:20004616..20004640 (25 bp)
TACTGGCTCACCATGTCGATCGGCA
LOC_Os05g34010
Os.34673.1.S1_at--816--9711Chr05:20004516..20004540 (25 bp)
TCAACCGAGCCAAGCTGGACAGCTA
LOC_Os05g34010
Os.34673.1.S1_at--1123--9911Chr05:20004490..20004514 (25 bp)
TACTGGCTCGTCTTCGGCTTGCAGG
LOC_Os05g34010
Os.34673.1.S1_at--190--10611Chr05:20004445..20004469 (25 bp)
TTCGTCTGCGTCAGGTACTACACCT
LOC_Os05g34010
Os.34673.1.S1_at--55--7851Chr05:20004432..20004456 (25 bp)
GGTACTACACCTTCAAGCCATTGGA
LOC_Os05g34010
Os.34673.1.S1_at--973--4791Chr05:20004386..20004410 (25 bp)
GCTCGAGCTCTACCGTGGAAATGGC
LOC_Os05g34010
Os.34673.1.S1_at--95--1471Chr05:20004324..20004348 (25 bp)
AGAATGTGCATTTCAATCCCCTTGC
LOC_Os05g34010
Os.34673.1.S1_at--884--4191Chr05:20004307..20004331 (25 bp)
CCCCTTGCCGGATTGGAACAGAATA
LOC_Os05g34010
Os.34673.1.S1_at--909--7871Chr05:20004257..20004281 (25 bp)
GGTTTATGCTTTGATCTCACCATAT
LOC_Os05g34010
Os.34673.1.S1_at--946--1451Chr05:20004160..20004184 (25 bp)
AGAAGTGTATATGCCCATGTCCTCA
LOC_Os05g34010
Os.34673.1.S1_at--882--4611Chr05:20004084..20004108 (25 bp)
GCGAGATGTATCAATTTATCCCGGA
LOC_Os05g34010
Target Sequence 
TACTGGCTCACCATGTCGATCGGCAGCTACCTCGGCACGCTGCTCGTCACCATCATCCACGCCAAGACGCAGCGGAGCGG
GCAGTGGCTGCAGGACAACCTCAACCGAGCCAAGCTGGACAGCTACTACTGGCTCGTCTTCGGCTTGCAGGGGCTCAACC
TCATCTACTACTTCGTCTGCGTCAGGTACTACACCTTCAAGCCATTGGAGACGGTGAAACCTGAGGAGGAGCTCGAGCTC
TACCGTGGAAATGGCAACGAGGGCGATGGCAAGAAAGGAGGAACCTTGAAGTAGAATGTGCATTTCAATCCCCTTGCCGG
ATTGGAACAGAATAATATGTTCACTTTTACTACATAGATGGTTTATGCTTTGATCTCACCATATAAATTGCCGAGATTTT
ATGAACTCTCTGGCAAATAGAAGAACGTATTTTTGTGTGTCATATATTCAAGAACAAGAAGTGTATATGCCCATGTCCTC
AAAGGATTTTCTCTGTTTGATCAGTGTTTACATAAACAAGTAAAATATCAAGGCGAGATGTATCAATTTATCCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis