Browse Element(s) Details


OsAffx.7292.1.S1_at

Description tigr:9639.m03064
TID=OsAffx.7292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3409011/11hypothetical protein
LOC_Os04g400001/11retrotransposon protein, putative, unclassified
LOC_Os12g426901/11retrotransposon protein, putative, unclassified
LOC_Os01g173701/11retrotransposon protein, putative, unclassified
LOC_Os05g339901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34070OsAffx.19149.1.S1_at11/1111+19423950..19425676hypothetical protein
LOC_Os11g34080Os.6231.1.S1_at11/1111+19438274..19439678expressed protein
LOC_Os11g34080OsAffx.31032.1.S1_at1/1111+19438274..19439678expressed protein
LOC_Os11g34090OsAffx.7292.1.S1_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.7292.1.S1_x_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.31930.1.S1_x_at1/1111+19448650..19452078hypothetical protein
LOC_Os11g34100NANA11+19453993..19454574hypothetical protein
LOC_Os11g34110Os.53335.1.S1_at11/1111+19455501..19462028expressed protein
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7292.1.S1_at--826--4771Chr11:19451739..19451763 (25 bp)
GCTGCTGTCGTCCAAGGGGATCATC
LOC_Os11g34090
OsAffx.7292.1.S1_at--894--9591Chr11:19451759..19451783 (25 bp)
TCATCCAGAACGCCGTGGGCAGCGA
LOC_Os11g34090
OsAffx.7292.1.S1_at--549--3271Chr11:19451805..19451829 (25 bp)
CAACAGCATATCCAAGGACGTGGTG
LOC_Os11g34090
OsAffx.7292.1.S1_at--170--3731Chr11:19451877..19451901 (25 bp)
CTACTGCCGGCAGCCGTGGAACATG
LOC_Os11g34090
OsAffx.7292.1.S1_at--152--7571Chr11:19451906..19451930 (25 bp)
GGGCGAACCTGATCCACACGTACTT
LOC_Os11g34090
OsAffx.7292.1.S1_at--583--8851Chr11:19451915..19451939 (25 bp)
TGATCCACACGTACTTCAGGAGCCC
LOC_Os11g34090
OsAffx.7292.1.S1_at--72--7135Chr11:19451980..19452004 (25 bp)
GTCATGACCATCATGCAGACGGTCT
LOC_Os11g34090
OsAffx.7292.1.S1_at--1--9631Chr11:19451990..19452014 (25 bp)
TCATGCAGACGGTCTACACCGTGAT
LOC_Os11g34090
OsAffx.7292.1.S1_at--541--7811Chr11:19452000..19452024 (25 bp)
GGTCTACACCGTGATGTCGTTCTAC
LOC_Os11g34090
OsAffx.7292.1.S1_at--1010--9851Chr11:19452004..19452028 (25 bp)
TACACCGTGATGTCGTTCTACCAGC
LOC_Os11g34090
OsAffx.7292.1.S1_at--964--3971Chr11:19452009..19452033 (25 bp)
CGTGATGTCGTTCTACCAGCAGGCG
LOC_Os11g34090
Target Sequence 
GCTGCTGTCGTCCAAGGGGATCATCCAGAACGCCGTGGGCAGCGACAAGGCGGTGGCGAAGCTGTTCAACAGCATATCCA
AGGACGTGGTGCTGGAGCCGGAGAGCGCGCTCGACGGCGTGCAGCGGCAGGTGAACGCCTACTGCCGGCAGCCGTGGAAC
ATGTGGAGGGCGAACCTGATCCACACGTACTTCAGGAGCCCCTGGGCGTTCATGTCGCTCGCCGCCGCCATGTTCCTCCT
CGTCATGACCATCATGCAGACGGTCTACACCGTGATGTCGTTCTACCAGCAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis