Browse Element(s) Details


Os.53335.1.S1_at

Description gb:AK072076.1
DB_XREF= gi:32982099
TID=Os.53335.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119B18, full insert sequence.
FL= gb:AK072076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3411011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34080Os.6231.1.S1_at11/1111+19438274..19439678expressed protein
LOC_Os11g34080OsAffx.31032.1.S1_at1/1111+19438274..19439678expressed protein
LOC_Os11g34090OsAffx.7292.1.S1_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.7292.1.S1_x_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.31930.1.S1_x_at1/1111+19448650..19452078hypothetical protein
LOC_Os11g34100NANA11+19453993..19454574hypothetical protein
LOC_Os11g34110Os.53335.1.S1_at11/1111+19455501..19462028expressed protein
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed
LOC_Os11g34130Os.53213.1.S1_x_at10/1111+19484401..19487507expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53335.1.S1_at--512--7371Chr11:19456899..19456923 (25 bp)
GTGACATGCTTAATCGGTCTCCAGA
LOC_Os11g34110
Os.53335.1.S1_at--829--491Chr11:19456887..19456911 (25 bp)
ATCGGTCTCCAGATTGGCCATGTAA
LOC_Os11g34110
Os.53335.1.S1_at--985--4031Chr11:19456691..19456715 (25 bp)
CGATTCTATCATTGTGCTTGCTCAC
LOC_Os11g34110
Os.53335.1.S1_at--124--451Chr11:19456556..19456673 (25 bp)
ATCTCTTCGGTCTGCACATGAACAA
LOC_Os11g34110
Os.53335.1.S1_at--956--3071Chr11:19456532..19456556 (25 bp)
AATCACTGTACAGCCTGAGCTACAC
LOC_Os11g34110
Os.53335.1.S1_at--258--7111Chr11:19456503..19456527 (25 bp)
GTCACCACTGGCACTGCTGGTTTAT
LOC_Os11g34110
Os.53335.1.S1_at--342--3911Chr11:19456487..19456511 (25 bp)
CTGGTTTATTCTTCGTGGCTATCTA
LOC_Os11g34110
Os.53335.1.S1_at--610--8491Chr11:19455991..19456496 (25 bp)
TGGCTATCTACCTGCTGGTGGATGT
LOC_Os11g34110
Os.53335.1.S1_at--962--7831Chr11:19455961..19455985 (25 bp)
GGTACAAGAGGCCAGTTCTTCCCAT
LOC_Os11g34110
Os.53335.1.S1_at--521--10011Chr11:19455895..19455919 (25 bp)
TAGCATGCAACGTTATCCCAGTACT
LOC_Os11g34110
Os.53335.1.S1_at--141--3091Chr11:19455502..19455526 (25 bp)
AATAAAGTCAACCAGCTGCAGATAC
LOC_Os11g34110
Target Sequence 
GTGACATGCTTAATCGGTCTCCAGATTGGCCATGTAATTGTCCATTTCAAGAAGCACAATGAGAGGATTAAGCGATGGTC
GATTCTATCATTGTGCTTGCTCACTCTTGGCTTCTCTCTTCATCTCTTCGGTCTGCACATGAACAAATCACTGTACAGCC
TGAGCTACACCTGTGTCACCACTGGCACTGCTGGTTTATTCTTCGTGGCTATCTACCTGCTGGTGGATGTGAAAGGGTAC
AAGAGGCCAGTTCTTCCCATGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTCGTAGCATGCAACGTTATCCC
AGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTCTGAAACTCATTGGAATAGGAGGCTGATCGATGA
ATATATATCTTCCGGAAGTTCATGAGAGGGGATAATTAAGCTGCAAGCACAACATCATCATTTGCAGTGTTAGGTAGTCT
ACTGTTGATTTAGTTTTTTTTTAAAAAAAATGGTCTACGGAATGGCATAGAAATGGAGCAAGGCCAAAAAAATCAATAAA
GTCAACCAGCTGCAGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis