Browse Element(s) Details


Os.26851.1.A1_at

Description gb:AK058944.1
DB_XREF= gi:32968962
TID=Os.26851.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H09, full insert sequence.
FL= gb:AK058944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g341209/11importin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34090OsAffx.7292.1.S1_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.7292.1.S1_x_at11/1111+19448650..19452078hypothetical protein
LOC_Os11g34090OsAffx.31930.1.S1_x_at1/1111+19448650..19452078hypothetical protein
LOC_Os11g34100NANA11+19453993..19454574hypothetical protein
LOC_Os11g34110Os.53335.1.S1_at11/1111+19455501..19462028expressed protein
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed
LOC_Os11g34130Os.53213.1.S1_x_at10/1111+19484401..19487507expressed protein
LOC_Os11g34140OsAffx.31289.1.S1_at11/1111+19487560..19489787expressed protein
LOC_Os11g34150Os.28209.1.S1_a_at11/1111+19490834..19495702expressed protein
LOC_Os11g34150Os.49389.1.S1_x_at9/1111+19490834..19495702expressed protein
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26851.1.A1_at--560--6151Chr11:19470271..19470295 (25 bp)
GAGGTCGTTTGGTGCCTATTATGCA
LOC_Os11g34120
Os.26851.1.A1_at--975--1151Chr11:19470231..19470255 (25 bp)
AGTCTGTTTCTCCTTTTGCATAGCG
LOC_Os11g34120
Os.26851.1.A1_at--1067--8131Chr11:19470198..19470222 (25 bp)
GGACAAGGTCACTCTGCAGACTAGT
LOC_Os11g34120
Os.26851.1.A1_at--651--2451NONE
AATGACCGTTCCTCAAGTTGGAGTT
NONE
Os.26851.1.A1_at--715--6851Chr11:19470113..19470137 (25 bp)
GTTTGCTATGCTATACTCTTGGAAA
LOC_Os11g34120
Os.26851.1.A1_at--897--2111NONE
ACATGGTTTAGCTGTCGCATACTCC
NONE
Os.26851.1.A1_at--573--4951Chr11:19470071..19470095 (25 bp)
GCATACTCCAACATCTTCTGGTTTT
LOC_Os11g34120
Os.26851.1.A1_at--1079--5211Chr11:19470015..19470039 (25 bp)
GAATTTTATAGCTCTCTACACCCTC
LOC_Os11g34120
Os.26851.1.A1_at--829--10371Chr11:19469990..19470014 (25 bp)
TTTTCACAACCCGTGCGATGTACAA
LOC_Os11g34120
Os.26851.1.A1_at--293--9751Chr11:19469833..19469857 (25 bp)
TAATTGCTAGCTCATGAATCTCCCC
LOC_Os11g34120
Os.26851.1.A1_at--729--791Chr11:19469767..19469791 (25 bp)
ATGTGGCCTCATTCGGATCAGATCT
LOC_Os11g34120
Target Sequence 
GAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGTTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAG
GTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGA
GTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCAACATCTTCTGGTTTTTTGGGAAGCTGGG
AACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTG
TATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCA
AGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGG
GGTTTAAAAGACTTGTATAGATATTTATGTGGCCTCATTCGGATCAGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26851.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis