Browse Element(s) Details


Os.9476.1.S1_at

Description gb:AK071982.1
DB_XREF= gi:32982005
TID=Os.9476.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089B22, full insert sequence.
FL= gb:AK099080.1 gb:AK071982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3418011/11Uncharacterized protein family UPF0016 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed
LOC_Os11g34130Os.53213.1.S1_x_at10/1111+19484401..19487507expressed protein
LOC_Os11g34140OsAffx.31289.1.S1_at11/1111+19487560..19489787expressed protein
LOC_Os11g34150Os.28209.1.S1_a_at11/1111+19490834..19495702expressed protein
LOC_Os11g34150Os.49389.1.S1_x_at9/1111+19490834..19495702expressed protein
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
LOC_Os11g34220Os.12356.1.S1_at3/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.51660.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220OsAffx.14591.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.26818.2.S1_at1/1111+19534158..19538331hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9476.1.S1_at--568--2791Chr11:19508317..19508341 (25 bp)
AAGTTGACTAGTCCTCTTGAGGTCC
LOC_Os11g34180
Os.9476.1.S1_at--559--6151Chr11:19508299..19508323 (25 bp)
GAGGTCCTTTGGAAGTCTTTCAGCC
LOC_Os11g34180
Os.9476.1.S1_at--816--3671Chr11:19508284..19508307 (24 bp)
CTTTCAGCCTTGTTTTCTTTGCAGA
LOC_Os11g34180
Os.9476.1.S1_at--770--6031Chr11:19507990..19508014 (25 bp)
GAGATCGCTCTATGCTGGCTACAAT
LOC_Os11g34180
Os.9476.1.S1_at--55--3191Chr11:19507971..19507993 (23 bp)
CAATTGCGTTAGGTGCTGCTCAGTC
LOC_Os11g34180
Os.9476.1.S1_at--279--9651Chr11:19507861..19507883 (23 bp)
TCAGTCTCCTTTTGGTGTCGCAAGC
LOC_Os11g34180
Os.9476.1.S1_at--1101--3551Chr11:19507831..19507855 (25 bp)
CATAGCTGGACACTTGGTTGCAACT
LOC_Os11g34180
Os.9476.1.S1_at--1127--9231Chr11:19507781..19507805 (25 bp)
TCCTTGCCAACTACCTATCTGAGAA
LOC_Os11g34180
Os.9476.1.S1_at--685--10371Chr11:19507610..19507634 (25 bp)
TTTTTTGCTGTTTGCTGTTGCCACA
LOC_Os11g34180
Os.9476.1.S1_at--916--5131Chr11:19507499..19507523 (25 bp)
GCAAAACTGGGCCTTGTCCTTGTTG
LOC_Os11g34180
Os.9476.1.S1_at--468--1191Chr11:19507465..19507489 (25 bp)
AGTAGGCATTATCCTCCTTTTCAGG
LOC_Os11g34180
Target Sequence 
AAGTTGACTAGTCCTCTTGAGGTCCTTTGGAAGTCTTTCAGCCTTGTTTTCTTTGCAGAATGGGGAGATCGCTCTATGCT
GGCTACAATTGCGTTAGGTGCTGCTCAGTCTCCTTTTGGTGTCGCAAGCGGAGCCATAGCTGGACACTTGGTTGCAACTT
TCCTTGCAATTGTTGGGGGAGCATTCCTTGCCAACTACCTATCTGAGAAGCTGGTTGGCCTGATAGGAGGAGTACTTTTT
TTGCTGTTTGCTGTTGCCACATTTTTTGGTGTATTCTAATATCTGAAGAATTTGTAGCTTGTAAAGGATTCTGTAGGTCA
ATTTAATCCTATTTTAAGGTTTTAAGGGCAAAACTGGGCCTTGTCCTTGTTGTTTGTAACTAGTAGGCATTATCCTCCTT
TTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis