Browse Element(s) Details


Os.12356.1.S1_at

Description gb:AK058871.1
DB_XREF= gi:32968889
TID=Os.12356.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-E09, full insert sequence.
FL= gb:AK058871.1 gb:AK105040.1 gb:AK100607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3423011/11expressed protein
LOC_Os11g342203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
LOC_Os11g34220Os.12356.1.S1_at3/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.51660.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220OsAffx.14591.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.26818.2.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34230Os.51660.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34230Os.12356.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34240NANA11+19552555..19553388retrotransposon protein, putative, unclassified
LOC_Os11g34250NANA11+19556012..19557313retrotransposon protein, putative, unclassified
LOC_Os11g34260NANA11+19558578..19559096retrotransposon protein, putative, unclassified
LOC_Os11g34270Os.11385.1.S1_a_at11/1111+19569696..19573124Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12356.1.S1_at--502--792Chr11:19544404..19544428 (25 bp)
ATGTGTCTGGCATTGACTATGAGAA
LOC_Os11g34230
Os.12356.1.S1_at--644--4091Chr11:19544212..19544236 (25 bp)
CGACGTGCGATCGAAGTTGCTGGAT
LOC_Os11g34230
Os.12356.1.S1_at--849--6812Chr11:19544163..19544187 (25 bp)
GTTTTTTCGACAGGTTGCATTGCAA
LOC_Os11g34230
Os.12356.1.S1_at--1115--10432Chr11:19544124..19544148 (25 bp)
TTAGGTCTCAATATACTCAGGAATG
LOC_Os11g34230
Os.12356.1.S1_at--396--2711Chr11:19544001..19544025 (25 bp)
AAGCTTGCTCAATATCTCGCTGAAC
LOC_Os11g34230
Os.12356.1.S1_at--584--791Chr11:19543925..19543949 (25 bp)
ATGTGGCTTAATCCAGATTCTTCTG
LOC_Os11g34230
Os.12356.1.S1_at--477--3431Chr11:19543912..19543936 (25 bp)
CAGATTCTTCTGAGTGTCGAGGTTG
LOC_Os11g34230
Os.12356.1.S1_at--47--1031Chr11:19543821..19543845 (25 bp)
AGGTCCGTGCTATCCAAAACTTTGC
LOC_Os11g34230
Os.12356.1.S1_at--942--2391Chr11:19543805..19543829 (25 bp)
AAACTTTGCATCGTTTAGCTGTCAA
LOC_Os11g34230
Os.12356.1.S1_at--1160--5811Chr11:19543774..19543798 (25 bp)
GACCGTGCTCAGTGGTGATTAACGT
LOC_Os11g34230
Os.12356.1.S1_at--903--131Chr11:19543757..19543781 (25 bp)
ATTAACGTGCTCTGTGATGAATGAC
LOC_Os11g34230
Target Sequence 
ATGTGTCTGGCATTGACTATGAGAATTGGGGCACTGTGAAACTCGCGACAGCTTTTAAGATCATATGCAGCCGCAAAATT
GATAAATCTGATGAGATGTTTTCAGACGACGTGCGATCGAAGTTGCTGGATGATGCAGATAAATACAAAGATCTTGTTTT
TTCGACAGGTTGCATTGCAAACTANAAAAAAATTTTAGGTCTCAATATACTCAGGAATGATAAAATGGATCAATTGGCTG
AGTTGGTTAAGGTAGCTAGGATTAAAGCTGAACACGTGAGGGTGCCTGAGAATGTGCCTGAGAACTAAGATCACTACAAG
CTTGCTCAATATCTCGCTGAACCTCTTGCAGGCTAAATAATTTGGTTTGCCAGTTAGGAAGCGTTTGGTATGCATGTGGC
TTAATCCAGATTCTTCTGAGTGTCGAGGTTGTGATCTCGGTTGGCTTAAACATTATTGTGCATCTTTTGTAAATCTAGTC
TGGTATTTGAGAAGCTAAGGTCCGTGCTATCCAAAACTTTGCATCGTTTAGCTGTCAAACAAANGACCGTGCTCAGTGGT
GATTAACGTGCTCTGTGATGAATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis