Browse Element(s) Details


Os.6787.1.S1_at

Description gb:AF464904.1
DB_XREF= gi:18481623
GEN=DrAp1
TID=Os.6787.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6787 (NCBI UniGene Cluster)
DEF=Oryza sativa repressor protein (DrAp1) mRNA, complete cds.
PROD=repressor protein
FL= gb:AF464904.1 gb:AK072844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3420011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
LOC_Os11g34220Os.12356.1.S1_at3/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.51660.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220OsAffx.14591.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.26818.2.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34230Os.51660.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34230Os.12356.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34240NANA11+19552555..19553388retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6787.1.S1_at--572--6851Chr11:19527743..19527767 (25 bp)
GTTTGCTGATCAGGGCGAAGCCTTA
LOC_Os11g34200
Os.6787.1.S1_at--849--8031Chr11:19527776..19527800 (25 bp)
GGAGACGGTTCCAGAGACCATCCAT
LOC_Os11g34200
Os.6787.1.S1_at--912--2411Chr11:19527894..19527918 (25 bp)
AAAAACGACGACCATCAGCCGGATT
LOC_Os11g34200
Os.6787.1.S1_at--761--8511Chr11:19527938..19527962 (25 bp)
TGGAAACATCGGTGTCGGACCATCC
LOC_Os11g34200
Os.6787.1.S1_at--935--8091Chr11:19527954..19527978 (25 bp)
GGACCATCCGGTTTTGGACATCTTA
LOC_Os11g34200
Os.6787.1.S1_at--1101--5611Chr11:19528008..19528032 (25 bp)
GACAACGAGGATTAGCCACGGCCAT
LOC_Os11g34200
Os.6787.1.S1_at--1150--3331Chr11:19528024..19528048 (25 bp)
CACGGCCATCTTCTGATTGTTATGC
LOC_Os11g34200
Os.6787.1.S1_at--69--1091Chr11:19528055..19528079 (25 bp)
AGGGCAGTTCTCCTGGTGTTGTAAA
LOC_Os11g34200
Os.6787.1.S1_at--383--651Chr11:19528125..19528149 (25 bp)
ATGCAGTATGTAGTTGTCCCGTGTA
LOC_Os11g34200
Os.6787.1.S1_at--1110--3971Chr11:19528144..19528168 (25 bp)
CGTGTAACTTTGTCTGTTTTCCAAT
LOC_Os11g34200
Os.6787.1.S1_at--468--10731Chr11:19528175..19528199 (25 bp)
TTGCTAGTTGCCTCACATTGTTGAC
LOC_Os11g34200
Target Sequence 
GTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAA
GCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGAC
GACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGT
GCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGT
TCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTC
CCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis