Browse Element(s) Details


Os.11484.1.S1_at

Description gb:AK064895.1
DB_XREF= gi:32974913
TID=Os.11484.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000L07, full insert sequence.
FL= gb:AK064895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3421011/11Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
LOC_Os11g34220Os.12356.1.S1_at3/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.51660.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220OsAffx.14591.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.26818.2.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34230Os.51660.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34230Os.12356.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34240NANA11+19552555..19553388retrotransposon protein, putative, unclassified
LOC_Os11g34250NANA11+19556012..19557313retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11484.1.S1_at--205--3151Chr11:19529882..19529906 (25 bp)
AATTAACACCTCTGGAGCTTTCTGA
LOC_Os11g34210
Os.11484.1.S1_at--1032--5911Chr11:19529868..19529892 (25 bp)
GAGCTTTCTGAATTGATTGCATCTA
LOC_Os11g34210
Os.11484.1.S1_at--793--6051Chr11:19529590..19529613 (24 bp)
GAGATTCTGATTGAACTCATTGCGA
LOC_Os11g34210
Os.11484.1.S1_at--872--2871Chr11:19529565..19529589 (25 bp)
AAGGTGGAACTGTCAAGTCTGTGAT
LOC_Os11g34210
Os.11484.1.S1_at--327--10251Chr11:19529142..19529552 (25 bp)
TTTGGTTCAGATAGCAGATCCTGCA
LOC_Os11g34210
Os.11484.1.S1_at--484--1291Chr11:19529127..19529151 (25 bp)
AGATCCTGCAGCAATTGAGGCAATG
LOC_Os11g34210
Os.11484.1.S1_at--853--2511Chr11:19529071..19529095 (25 bp)
AACTTGAGCAGTATCGGTCCGGGAA
LOC_Os11g34210
Os.11484.1.S1_at--1005--6851Chr11:19528845..19528869 (25 bp)
GTTTGTCGACAAACGGAGACTCATG
LOC_Os11g34210
Os.11484.1.S1_at--206--5991Chr11:19528830..19528854 (25 bp)
GAGACTCATGTTGTAGTCCACGAGT
LOC_Os11g34210
Os.11484.1.S1_at--575--8151Chr11:19528805..19528829 (25 bp)
GGACAATCGAACTAAACCCTGCAAT
LOC_Os11g34210
Os.11484.1.S1_at--1063--6311Chr11:19528761..19528785 (25 bp)
GATGAATTCTCTGTTAGCTCCAGTA
LOC_Os11g34210
Target Sequence 
AATTAACACCTCTGGAGCTTTCTGAATTGATTGCATCTATAAGGAATGGAACTATCAGTGGGAAGATTGGAAAGGAGATT
CTGATTGAACTCATTGCGAAAGGTGGAACTGTCAAGTCTGTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCTGC
AGCAATTGAGGCAATGGTAGATCAAGTATTAGCTGATAATCCAAAGCAACTTGAGCAGTATCGGTCCGGGAAAACTAAAT
TGCAAGGATTTTTTGCTGGCCAGGTGATGAAAGCATCAAAGGGTAAAGCTAATCCTGTTTTGTTGAACAAAATCCTCGGG
GAGAAATTGAAGGCCAATAGTTGAGGGGGTTTGTCGACAAACGGAGACTCATGTTGTAGTCCACGAGTGGACAATCGAAC
TAAACCCTGCAATTTGGGGTCTATTTTTCAATGATGAATTCTCTGTTAGCTCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis