Browse Element(s) Details


Os.51660.1.S1_at

Description gb:AK063297.1
DB_XREF= gi:32973315
TID=Os.51660.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E11, full insert sequence.
FL= gb:AK063297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3423011/11expressed protein
LOC_Os11g371201/11Nucleolar protein NOP5, putative
LOC_Os11g342201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
LOC_Os11g34220Os.12356.1.S1_at3/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.51660.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220OsAffx.14591.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.26818.2.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34230Os.51660.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34230Os.12356.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34240NANA11+19552555..19553388retrotransposon protein, putative, unclassified
LOC_Os11g34250NANA11+19556012..19557313retrotransposon protein, putative, unclassified
LOC_Os11g34260NANA11+19558578..19559096retrotransposon protein, putative, unclassified
LOC_Os11g34270Os.11385.1.S1_a_at11/1111+19569696..19573124Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51660.1.S1_at--1134--8871Chr11:19546415..19546439 (25 bp)
TGAGTGGCCCTTCTTTCGTTTCCTT
LOC_Os11g34230
Os.51660.1.S1_at--83--9391Chr11:19546400..19546424 (25 bp)
TCGTTTCCTTCCCATTGTTTTGTTG
LOC_Os11g34230
Os.51660.1.S1_at--948--6951Chr11:19546363..19546387 (25 bp)
GTAGCAATGTTGCATCATTTGTGAT
LOC_Os11g34230
Os.51660.1.S1_at--610--10831Chr11:19546345..19546369 (25 bp)
TTGTGATTGATGCATTCTTTTTCTT
LOC_Os11g34230
Os.51660.1.S1_at--681--10373Chr11:19546320..19546344 (25 bp)
TTTTCTGTTTGTGTCGAGGGAGCGT
LOC_Os11g34230
Os.51660.1.S1_at--882--7631Chr11:19546303..19546327 (25 bp)
GGGAGCGTAAACACAATCTTCTGGT
LOC_Os11g34230
Os.51660.1.S1_at--958--431Chr11:19546288..19546312 (25 bp)
ATCTTCTGGTTTATTATCATGCTCA
LOC_Os11g34230
Os.51660.1.S1_at--1043--10591Chr11:19546231..19546255 (25 bp)
TTCTCCATGTAAATCATATGCCCTA
LOC_Os11g34230
Os.51660.1.S1_at--913--4491Chr11:19546212..19546236 (25 bp)
GCCCTAAAATTGCTTACCTGCTACT
LOC_Os11g34230
Os.51660.1.S1_at--1026--1411Chr11:19545909..19545933 (25 bp)
AGAAAGTCACTGTATTCGAGCGAGT
LOC_Os11g34230
Os.51660.1.S1_at--742--9371Chr11:19545894..19545918 (25 bp)
TCGAGCGAGTGAGGCAACACAACAT
LOC_Os11g34230
Target Sequence 
TGAGTGGCCCTTCTTTCGTTTCCTTCCCATTGTTTTGTTGCCAAATCAATTAGTAGCAATGTTGCATCATTTGTGATTGA
TGCATTCTTTTTCTTTTTTCTGTTTGTGTCGAGGGAGCGTAAACACAATCTTCTGGTTTATTATCATGCTCAAAAACATT
TCCAAACTCCCCCCCCCCCCAAATTTCTCCATGTAAATCATATGCCCTAAAATTGCTTACCTGCTACTCTCTCTGTTTCA
TATTGTAAGTCGTTTTGACTTTTTTTCCTAGTTAATATTTTAAGTTTGACCAAGTTTTTAGACATATAATAACATTTTCA
ACACAAAACAAACATATTATAAAAATATATTCAACGATACATTTAATGGAACTAATTTAGTGTAGTAGATATTGCTATTT
TTTCTTATAAACTTGGTCAAACGTAAAAAAGTTTGATTTAAAATAAAGTCAAAATGACTTGTAATATGAGACGGAGTGAG
TAATTGCTAGTAGCTTGGAATGATTGAGAAAGTCACTGTATTCGAGCGAGTGAGGCAACACAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis