Browse Element(s) Details


Os.49389.1.S1_x_at

Description gb:AK108139.1
DB_XREF= gi:32993348
TID=Os.49389.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E06, full insert sequence.
FL= gb:AK108139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g341509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed
LOC_Os11g34130Os.53213.1.S1_x_at10/1111+19484401..19487507expressed protein
LOC_Os11g34140OsAffx.31289.1.S1_at11/1111+19487560..19489787expressed protein
LOC_Os11g34150Os.28209.1.S1_a_at11/1111+19490834..19495702expressed protein
LOC_Os11g34150Os.49389.1.S1_x_at9/1111+19490834..19495702expressed protein
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005681cellular_componentspliceosome complex
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49389.1.S1_x_at--471--6911NONE
GTATCGCTCCTCCTATAGAAGGAAG
NONE
Os.49389.1.S1_x_at--165--2771Chr11:19493595..19493619 (25 bp)
AAGACGGCGCATTAGTCGTTCTCCA
LOC_Os11g34150
Os.49389.1.S1_x_at--263--2091Chr11:19493559..19493583 (25 bp)
ACATAAAAGTCGGTCTCCATCGCAA
LOC_Os11g34150
Os.49389.1.S1_x_at--581--8031Chr11:19493509..19493533 (25 bp)
GGAGTGTCACTAGCTCTCCGATTAC
LOC_Os11g34150
Os.49389.1.S1_x_at--422--11Chr11:19493489..19493513 (25 bp)
ATTACCAAATCTCAAAGTCCTCCTG
LOC_Os11g34150
Os.49389.1.S1_x_at--4--8051Chr11:19493393..19493417 (25 bp)
GGAGTATCTACTTTGCTATGCGGAG
LOC_Os11g34150
Os.49389.1.S1_x_at--215--4691Chr11:19493374..19493398 (25 bp)
GCGGAGTCTGCATACCATCTACAAA
LOC_Os11g34150
Os.49389.1.S1_x_at--221--6831Chr11:19493342..19493366 (25 bp)
GTTTACTATTTATTCGCTTCCCTAT
LOC_Os11g34150
Os.49389.1.S1_x_at--487--4911Chr11:19493327..19493351 (25 bp)
GCTTCCCTATTCCTCATTTATGTTG
LOC_Os11g34150
Os.49389.1.S1_x_at--264--1591Chr11:19493211..19493235 (25 bp)
AGCTCTATTGGCAATCTGTGCTCTA
LOC_Os11g34150
Os.49389.1.S1_x_at--598--2411NONE
AAACAACTGCACGTCTTGCTTCCAA
NONE
Target Sequence 
GTATCGCTCCTCCTATAGAAGGAAGANNCCCTTCACCTTCCCCAAGACGGCGCATTAGTCGTTCTCCATCTCCCAGGCGA
CATAAAAGTCGGTCTCCATCGCAAAGACACTACAGAAGAAAGAGAAGTCGGAGTGTCACTAGCTCTCCGATTACCAAATC
TCAAAGTCCTCCTGTTGCGCNTGGGCCAGCAGAGAATAANAATATTGTTGATAAGCAAAGGCTAGAANAAGAAAAGAAAA
GGTGGGGAGTATCTACTTTGCTATGCGGAGTCTGCATACCATCTACAAACCNAACTGTTTACTATTTATTCGCTTCCCTA
TTCCTCATTTATGTTGACAGCATGCTATTCATTAATCAACATTTTTAACATCCTGTTAAAATTATATTCATCTAACTGTT
GTTTTTACCAGAATATATCTTGAGGTCAGCTCTATTGGCAATCTGTGCTCTAAATACATTATTTAAGTTCTTTTATGAAG
AATAATGTTTTTTTTAAATGACCTTCTTGATTATTTAATCTGCAAAACTTTTCTTNTATGAAACAACTGCACGTCTTGCT
TCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49389.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis