Browse Element(s) Details


OsAffx.31289.1.S1_at

Description tigr:9639.m03069
TID=OsAffx.31289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3414011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34120Os.26851.1.A1_at9/1111+19469714..19482440importin, putative, expressed
LOC_Os11g34130Os.53213.1.S1_x_at10/1111+19484401..19487507expressed protein
LOC_Os11g34140OsAffx.31289.1.S1_at11/1111+19487560..19489787expressed protein
LOC_Os11g34150Os.28209.1.S1_a_at11/1111+19490834..19495702expressed protein
LOC_Os11g34150Os.49389.1.S1_x_at9/1111+19490834..19495702expressed protein
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31289.1.S1_at--50--3891Chr11:19488518..19488542 (25 bp)
CTGTGGTCGGGTTCTTGGACTGATA
LOC_Os11g34140
OsAffx.31289.1.S1_at--1038--71Chr11:19488459..19488483 (25 bp)
ATTGCCGGATGCCAAATTCGTCTAC
LOC_Os11g34140
OsAffx.31289.1.S1_at--746--2511Chr11:19488447..19488471 (25 bp)
CAAATTCGTCTACCATTCCGGTGGT
LOC_Os11g34140
OsAffx.31289.1.S1_at--293--91Chr11:19488434..19488457 (24 bp)
ATTCCGGTGGTCGATGGCCTCAGGA
LOC_Os11g34140
OsAffx.31289.1.S1_at--525--611Chr11:19487806..19487830 (25 bp)
ATGCGTATGATGAACTCTCGGAGCT
LOC_Os11g34140
OsAffx.31289.1.S1_at--487--5671Chr11:19487766..19487790 (25 bp)
GACATCATTACCAACATCTGTGCGG
LOC_Os11g34140
OsAffx.31289.1.S1_at--1042--7291Chr11:19487747..19487771 (25 bp)
GTGCGGTCGCAGCATATTGACCAAT
LOC_Os11g34140
OsAffx.31289.1.S1_at--1045--6631Chr11:19487689..19487713 (25 bp)
GTTGTACAAGATTCATCCCCATGGT
LOC_Os11g34140
OsAffx.31289.1.S1_at--706--9611Chr11:19487677..19487701 (25 bp)
TCATCCCCATGGTTCAGCATTAAGG
LOC_Os11g34140
OsAffx.31289.1.S1_at--396--7591Chr11:19487630..19487654 (25 bp)
GGGCATATGTTTTCCTAACCTTCAT
LOC_Os11g34140
OsAffx.31289.1.S1_at--1040--2631Chr11:19487614..19487638 (25 bp)
AACCTTCATAGATCCTGCTGTTAGA
LOC_Os11g34140
Target Sequence 
CTGTGGTCGGGTTCTTGGACTGATAGGTGGATCGATGAGGGGAAGAAGGTGGTCGCGGCATTGCCGGATGCCAAATTCGT
CTACCATTCCGGTGGTCGATGGCCTCAGGAGGATGCGTATGATGAACTCTCGGAGCTGATAGCAGAGTTTGTGACATCAT
TACCAACATCTGTGCGGTCGCAGCATATTGACCAATCTTCTGAACAAGCAACAGCTCAAGAGTAATCAAGTTGTACAAGA
TTCATCCCCATGGTTCAGCATTAAGGTTGTGTGTTTGGAAATGCCTGTGGGCATATGTTTTCCTAACCTTCATAGATCCT
GCTGTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis