Browse Element(s) Details


OsAffx.14953.1.S1_at

Description tigr:9633.m03145
TID=OsAffx.14953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3402011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33990OsAffx.7292.1.S1_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990Os.28943.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g34000OsAffx.27148.1.S1_x_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34000Os.55557.1.S1_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34010Os.34673.1.S1_at11/115+20004058..20008382POT family protein, expressed
LOC_Os05g34020OsAffx.14953.1.S1_at11/115+20009945..20011105hypothetical protein
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14953.1.S1_at--903--2591Chr05:20009991..20010015 (25 bp)
AACGAACTTGGCGAAGCGGAGCGAA
LOC_Os05g34020
OsAffx.14953.1.S1_at--977--9051Chr05:20010147..20010171 (25 bp)
TGCATCAAGTTTCCCTGGCGACGAA
LOC_Os05g34020
OsAffx.14953.1.S1_at--234--6852Chr05:20010155..20010179 (25 bp)
GTTTCCCTGGCGACGAATCGAGTAA
LOC_Os05g34020
OsAffx.14953.1.S1_at--368--1852Chr05:20010167..20010191 (25 bp)
ACGAATCGAGTAAGCTCGCCGGAGT
LOC_Os05g34020
OsAffx.14953.1.S1_at--243--9211Chr05:20010345..20010369 (25 bp)
TCCAAGCCCGCTCGGATCTTGGCAA
LOC_Os05g34020
OsAffx.14953.1.S1_at--607--6051Chr05:20010890..20010914 (25 bp)
GAGATTGTGATCTTTTCTGCTGGTC
LOC_Os05g34020
OsAffx.14953.1.S1_at--788--7171Chr05:20010912..20010936 (25 bp)
GTCTGCTAGCCACTCTGGCAGAAAT
LOC_Os05g34020
OsAffx.14953.1.S1_at--612--5991Chr05:20010937..20010961 (25 bp)
GAGACGGGACACTATTGCTACTTGC
LOC_Os05g34020
OsAffx.14953.1.S1_at--335--9091Chr05:20010952..20010976 (25 bp)
TGCTACTTGCTTCCTCTGTCAGTTG
LOC_Os05g34020
OsAffx.14953.1.S1_at--951--4251Chr05:20011021..20011043 (23 bp)
CCGGTGCCACTTCCGGCGATTGAGA
LOC_Os05g34020
OsAffx.14953.1.S1_at--103--1451Chr05:20011041..20011065 (25 bp)
AGAAGAATTGCAAGGGTCAACCCCT
LOC_Os05g34020
Target Sequence 
AACGAACTTGGCGAAGCGGAGCGAAGCGCGAGGACGACGACGAGGTCCGCGACGTGGAGCGGGAGATGATGACGAGGTCA
GTGGCACAGGAGCGGGATATGGCAACGAGGTTGGCGGCGCAGGAGCGGGGGACAGCGACGAGCTCACCAGCGTCGCTGCA
TCAAGTTTCCCTGGCGACGAATCGAGTAAGCTCGCCGGAGTGGGTCTACCTCCTCGCCCTAGTCCTCTCCTCGCTCATTC
CTCTCCGCCCATTCCTCCCTTGCCTTTGCCGCAACCCGACCTGCCCCCGCCGCTTTTTCACGTCCTTCGTCTTCTCCCCT
TCCTCATCGGCACTCGGCAGCGTCGCCGGCGAGCTCCAAGCCCGCTCGGATCTTGGCAATGGCGGCGCAGGTCTGCAGCA
GATAGCAGAGATTGTGATCTTTTCTGCTGGTCTGCTAGCCACTCTGGCAGAAATGAGACGGGACACTATTGCTACTTGCT
TCCTCTGTCAGTTGCCGGTGCCACTTCCGGCGATTGAGAAGAATTGCAAGGGTCAACCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis