Browse Element(s) Details


Os.55557.1.S1_at

Description gb:AK108312.1
DB_XREF= gi:32993521
TID=Os.55557.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G01, full insert sequence.
FL= gb:AK108312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3400011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33980NANA5+19977879..19983840retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990Os.28943.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g34000OsAffx.27148.1.S1_x_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34000Os.55557.1.S1_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34010Os.34673.1.S1_at11/115+20004058..20008382POT family protein, expressed
LOC_Os05g34020OsAffx.14953.1.S1_at11/115+20009945..20011105hypothetical protein
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55557.1.S1_at--642--7691Chr05:20003951..20003975 (25 bp)
GGTGTTGTAAGCTAGCATAATTAGG
LOC_Os05g34000
Os.55557.1.S1_at--153--1571Chr05:20003960..20003984 (25 bp)
AGCTAGCATAATTAGGGAGTGACTT
LOC_Os05g34000
Os.55557.1.S1_at--749--3131Chr05:20003969..20003993 (25 bp)
AATTAGGGAGTGACTTATTGACATC
LOC_Os05g34000
Os.55557.1.S1_at--1064--10071Chr05:20003972..20003996 (25 bp)
TAGGGAGTGACTTATTGACATCAGT
LOC_Os05g34000
Os.55557.1.S1_at--652--7651Chr05:20003974..20003998 (25 bp)
GGGAGTGACTTATTGACATCAGTGA
LOC_Os05g34000
Os.55557.1.S1_at--428--8031Chr05:20003975..20003999 (25 bp)
GGAGTGACTTATTGACATCAGTGAA
LOC_Os05g34000
Os.55557.1.S1_at--509--2091Chr05:20003989..20004013 (25 bp)
ACATCAGTGAAGTAATTTGGTCAGA
LOC_Os05g34000
Os.55557.1.S1_at--892--3451Chr05:20003993..20004017 (25 bp)
CAGTGAAGTAATTTGGTCAGAGCTA
LOC_Os05g34000
Os.55557.1.S1_at--791--5331Chr05:20003997..20004021 (25 bp)
GAAGTAATTTGGTCAGAGCTATCTT
LOC_Os05g34000
Os.55557.1.S1_at--641--7071Chr05:20004000..20004024 (25 bp)
GTAATTTGGTCAGAGCTATCTTTCT
LOC_Os05g34000
Os.55557.1.S1_at--356--9751Chr05:20004001..20004025 (25 bp)
TAATTTGGTCAGAGCTATCTTTCTT
LOC_Os05g34000
Target Sequence 
GGTGTTGTAAGCTAGCATAATTAGGGAGTGACTTATTGACATCAGTGAAGTAATTTGGTCAGAGCTATCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis