Browse Element(s) Details


OsAffx.27149.1.S1_at

Description tigr:9633.m03146
TID=OsAffx.27149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nitrite transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3403011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34000OsAffx.27148.1.S1_x_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34000Os.55557.1.S1_at11/115+20001916..20004027POT family protein, expressed
LOC_Os05g34010Os.34673.1.S1_at11/115+20004058..20008382POT family protein, expressed
LOC_Os05g34020OsAffx.14953.1.S1_at11/115+20009945..20011105hypothetical protein
LOC_Os05g34030OsAffx.27149.1.S1_at11/115+20015998..20018016POT family protein, expressed
LOC_Os05g34030OsAffx.27148.1.S1_x_at1/115+20015998..20018016POT family protein, expressed
LOC_Os05g34040Os.52159.1.S1_at11/115+20019561..20029058FAD dependent oxidoreductase family protein, expressed
LOC_Os05g34050Os.5535.2.S1_x_at11/115+20029651..20033948bZIP transcription factor family protein, expressed
LOC_Os05g34060OsAffx.4513.1.S1_at11/115+20038124..20038535hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27149.1.S1_at--755--391Chr05:20017435..20017459 (25 bp)
ATCAGCGCCGTGAGCAACGCCGTGG
LOC_Os05g34030
OsAffx.27149.1.S1_at--289--4011Chr05:20017542..20017566 (25 bp)
CGTGCTCTGGATGGCGCCGCAGTAC
LOC_Os05g34030
OsAffx.27149.1.S1_at--643--4731Chr05:20017662..20017686 (25 bp)
GCTGTACTGGCTGACCATGTCGGCG
LOC_Os05g34030
OsAffx.27149.1.S1_at--964--8071Chr05:20017688..20017712 (25 bp)
GGAGCTACATGAGCACGCTGCTGGT
LOC_Os05g34030
OsAffx.27149.1.S1_at--141--9911Chr05:20017789..20017813 (25 bp)
TACTACTGGCTCGTGGTGACGCTGC
LOC_Os05g34030
OsAffx.27149.1.S1_at--274--8931Chr05:20017805..20017829 (25 bp)
TGACGCTGCAGGTGATCAACGTCGT
LOC_Os05g34030
OsAffx.27149.1.S1_at--241--9411Chr05:20017826..20017850 (25 bp)
TCGTCTACTTCGTCATCTGCGCCAA
LOC_Os05g34030
OsAffx.27149.1.S1_at--633--9151Chr05:20017843..20017867 (25 bp)
TGCGCCAAGCTGTACACCTACAAGA
LOC_Os05g34030
OsAffx.27149.1.S1_at--863--9851Chr05:20017855..20017879 (25 bp)
TACACCTACAAGAAGCTAGAAACAG
LOC_Os05g34030
OsAffx.27149.1.S1_at--242--5531Chr05:20017873..20017897 (25 bp)
GAAACAGTCGATGGAGTGAGCACAG
LOC_Os05g34030
OsAffx.27149.1.S1_at--285--8751Chr05:20017962..20017986 (25 bp)
TGTAAAAGATGTAGAGCTTCAGCCT
LOC_Os05g34030
Target Sequence 
ATCAGCGCCGTGAGCAACGCCGTGGCGGCGGCCGTCGAGGGGAGGAGGCGGCGCGCCGCGGCGAGCCACGGCCTCCTCGA
CGAGCCCGGCGCCACCGTGCCGATGAGCGTGCTCTGGATGGCGCCGCAGTACGCCATCCACGGCGCGGCCGACGCGTTCA
TGGACGTCGGCCGCATGGAGTTCCTGTACGACCAGGCGCCCGAGGGCATGCGGAGCACGGCGGCGGCGCTGTACTGGCTG
ACCATGTCGGCGGGGAGCTACATGAGCACGCTGCTGGTGACGGCGGTGCACGAGAGGACCAGAGGCGAAGGGGAGTGGCT
CCAGGACAACCTCAACCGGGGGAGGCTGGACCGCTACTACTGGCTCGTGGTGACGCTGCAGGTGATCAACGTCGTCTACT
TCGTCATCTGCGCCAAGCTGTACACCTACAAGAAGCTAGAAACAGTCGATGGAGTGAGCACAGGGGAGAGAAATGACATA
GTTGATGATCAGGAGAATGCAGGGGAGAGAGATGAGAAAGGAAGCGATGTAAAAGATGTAGAGCTTCAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis