Browse Element(s) Details


Os.50748.1.S1_at

Description gb:AK058277.1
DB_XREF= gi:32968295
TID=Os.50748.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C06, full insert sequence.
FL= gb:AK058277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3416010/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34130Os.51788.2.S1_at11/115+20095069..20095865expressed protein
LOC_Os05g34140NANA5+20098495..20102020retrotransposon protein, putative, unclassified
LOC_Os05g34150Os.57507.1.S1_x_at10/115+20109210..20110617Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os05g34160Os.50748.1.S1_at10/115+20113860..20115430mTERF family protein, expressed
LOC_Os05g34170Os.45929.1.S1_at11/115+20120976..20124254Tubulin beta-6 chain, putative, expressed
LOC_Os05g34180Os.18877.1.S1_at11/115+20127170..20130433Isopentenyl-diphosphate delta-isomerase II, putative, expressed
LOC_Os05g34190Os.40855.4.S1_x_at1/115+20133326..20136837hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50748.1.S1_at--580--4291Chr05:20114939..20114963 (25 bp)
CCTCGCACGGTTCATGAAGGCGTAC
LOC_Os05g34160
Os.50748.1.S1_at--530--8731Chr05:20114993..20115017 (25 bp)
TGTCTTGCGGGCTATCAATGGCGAG
LOC_Os05g34160
Os.50748.1.S1_at--848--6011Chr05:20115015..20115039 (25 bp)
GAGATCCCCTTCGAGGGCTTTGGGC
LOC_Os05g34160
Os.50748.1.S1_at--578--8651NONE
TGGGCTATTGCCAATTCGCCATCAG
NONE
Os.50748.1.S1_at--320--391Chr05:20115141..20115165 (25 bp)
ATCAGCCAGCCATTGTTTGGTCACT
LOC_Os05g34160
Os.50748.1.S1_at--897--1951Chr05:20115163..20115187 (25 bp)
ACTGGTGTGTTTCTTCTTGGTAGCA
LOC_Os05g34160
Os.50748.1.S1_at--1056--6951Chr05:20115182..20115206 (25 bp)
GTAGCACAATCCATCGGTCGTTGAA
LOC_Os05g34160
Os.50748.1.S1_at--1151--4011Chr05:20115200..20115224 (25 bp)
CGTTGAACATTGTATTGGCGTTGCT
LOC_Os05g34160
Os.50748.1.S1_at--157--1851Chr05:20115266..20115290 (25 bp)
ACGAGTAACTTACCTGGAACATGTT
LOC_Os05g34160
Os.50748.1.S1_at--365--251Chr05:20115347..20115371 (25 bp)
ATATCTACTGTCTGTTTGAAACTGG
LOC_Os05g34160
Os.50748.1.S1_at--335--5531Chr05:20115364..20115388 (25 bp)
GAAACTGGGTTTTCTACTTGATTGG
LOC_Os05g34160
Target Sequence 
CCTCGCACGGTTCATGAAGGCGTACGTGAGGCGGTACGAGGGGGAGGTCCCCGATGTCTTGCGGGCTATCAATGGCGAGA
TCCCCTTCGAGGGCTTTGGGCTTGGCGAGTTGGAGAAGAAGAAGCCACAGCGGCAGGAGAAGATCAGAAGGTGAATATAC
TGCTACTATATAATGTGCATTTTGGGCTATTGCCAATTCGCCATCAGCCAGCCATTGTTTGGTCACTGGTGTGTTTCTTC
TTGGTAGCACAATCCATCGGTCGTTGAACATTGTATTGGCGTTGCTGAATGAATTTTGAGTTAAACACTGAAACCCAATC
GAATTGTACGAGTAACTTACCTGGAACATGTTTGCCATTAGGAATTAGAAGTTCAGATTTCAGTTATGAACATTTGTATT
ATGTATCTATATCTACTGTCTGTTTGAAACTGGGTTTTCTACTTGATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis