Browse Element(s) Details


Os.45929.1.S1_at

Description gb:AB104732.1
DB_XREF= gi:34327937
GEN=OsTUB6
TID=Os.45929.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45929 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsTUB6 mRNA for beta-tubulin, complete cds.
PROD=beta-tubulin
FL= gb:AB104732.1 gb:AK122099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3417011/11Tubulin beta-6 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34140NANA5+20098495..20102020retrotransposon protein, putative, unclassified
LOC_Os05g34150Os.57507.1.S1_x_at10/115+20109210..20110617Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os05g34160Os.50748.1.S1_at10/115+20113860..20115430mTERF family protein, expressed
LOC_Os05g34170Os.45929.1.S1_at11/115+20120976..20124254Tubulin beta-6 chain, putative, expressed
LOC_Os05g34180Os.18877.1.S1_at11/115+20127170..20130433Isopentenyl-diphosphate delta-isomerase II, putative, expressed
LOC_Os05g34190Os.40855.4.S1_x_at1/115+20133326..20136837hypothetical protein
LOC_Os05g34200NANA5+20142458..20147582hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45929.1.S1_at--18--4072Chr05:20123899..20123923 (25 bp)
CGAGGCCGAGTACGAGGAAGAAGAG
LOC_Os05g34170
Os.45929.1.S1_at--639--951Chr05:20123922..20123946 (25 bp)
AGGACGCGATACAGGAGTAGAGACT
LOC_Os05g34170
Os.45929.1.S1_at--213--2131Chr05:20123932..20123956 (25 bp)
ACAGGAGTAGAGACTGTCTGGGCAA
LOC_Os05g34170
Os.45929.1.S1_at--137--10031Chr05:20123939..20123963 (25 bp)
TAGAGACTGTCTGGGCAATGGTACC
LOC_Os05g34170
Os.45929.1.S1_at--823--5731Chr05:20123943..20123967 (25 bp)
GACTGTCTGGGCAATGGTACCTCGT
LOC_Os05g34170
Os.45929.1.S1_at--571--1951Chr05:20123944..20123968 (25 bp)
ACTGTCTGGGCAATGGTACCTCGTA
LOC_Os05g34170
Os.45929.1.S1_at--1150--3851Chr05:20123945..20123969 (25 bp)
CTGTCTGGGCAATGGTACCTCGTAT
LOC_Os05g34170
Os.45929.1.S1_at--570--8711Chr05:20123946..20123970 (25 bp)
TGTCTGGGCAATGGTACCTCGTATC
LOC_Os05g34170
Os.45929.1.S1_at--1135--7171Chr05:20123947..20123971 (25 bp)
GTCTGGGCAATGGTACCTCGTATCC
LOC_Os05g34170
Os.45929.1.S1_at--1024--8631Chr05:20123950..20123974 (25 bp)
TGGGCAATGGTACCTCGTATCCCCT
LOC_Os05g34170
Os.45929.1.S1_at--760--8191Chr05:20123952..20123976 (25 bp)
GGCAATGGTACCTCGTATCCCCTGC
LOC_Os05g34170
Target Sequence 
CGAGGCCGAGTACGAGGAAGAAGAGGACGCGATACAGGAGTAGAGACTGTCTGGGCAATGGTACCTCGTATCCCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis