Browse Element(s) Details


OsAffx.22574.1.S1_at

Description gb:NM_185666.1
DB_XREF= gi:34898417
TID=OsAffx.22574.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g071508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07110Os.40855.5.S1_x_at11/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_at9/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_x_at6/116+3395348..3400021hypothetical protein
LOC_Os06g07120Os.7478.1.S1_at11/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120Os.7478.2.S1_x_at10/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130Os.34965.2.S1_s_at11/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07130Os.7011.1.S2_x_at1/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07140Os.4216.1.S1_a_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140Os.4216.2.S1_x_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150OsAffx.22574.1.S1_at8/116+3424691..3425038hypothetical protein
LOC_Os06g07160Os.33725.1.S1_at11/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07160Os.51581.1.S1_at1/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07170NANA6+3432634..3433780hypothetical protein
LOC_Os06g07180OsAffx.27485.1.S1_at10/116+3436575..3437625expressed protein
LOC_Os06g07190Os.49094.1.S1_at8/116+3439121..3442076expressed protein
LOC_Os06g07200OsAffx.15295.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200Os.18952.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200OsAffx.15295.1.S1_x_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22574.1.S1_at--49--5731Chr06:3424903..3424927 (25 bp)
GACTCCAGCCGCGTGTTCATGTTAC
LOC_Os06g07150
OsAffx.22574.1.S1_at--196--9231Chr06:3424900..3424924 (25 bp)
TCCAGCCGCGTGTTCATGTTACTCG
LOC_Os06g07150
OsAffx.22574.1.S1_at--792--1651Chr06:3424897..3424921 (25 bp)
AGCCGCGTGTTCATGTTACTCGCCG
LOC_Os06g07150
OsAffx.22574.1.S1_at--648--7411Chr06:3424891..3424915 (25 bp)
GTGTTCATGTTACTCGCCGTCGTTA
LOC_Os06g07150
OsAffx.22574.1.S1_at--1144--6731Chr06:3424889..3424913 (25 bp)
GTTCATGTTACTCGCCGTCGTTATC
LOC_Os06g07150
OsAffx.22574.1.S1_at--643--6791Chr06:3424870..3424894 (25 bp)
GTTATCCTCGTGCACCTGCTCACTG
LOC_Os06g07150
OsAffx.22574.1.S1_at--104--7351Chr06:3424861..3424885 (25 bp)
GTGCACCTGCTCACTGCAGGCGCGG
LOC_Os06g07150
OsAffx.22574.1.S1_at--1036--1831Chr06:3424699..3424723 (25 bp)
ACGCTCCGCAGCTACCTGATTGGAG
LOC_Os06g07150
OsAffx.22574.1.S1_at--921--10671Chr06:3424150..3424174 (25 bp)
TTGCCCGTCTTCTTGGGGAGGTCTC
NONE
OsAffx.22574.1.S1_at--697--7651Chr06:3424135..3424159 (25 bp)
GGGAGGTCTCATACCCGCATCGCTG
NONE
OsAffx.22574.1.S1_at--1159--3531Chr06:3424118..3424142 (25 bp)
CATCGCTGCGGCGTGCAAGCGCAAC
NONE
Target Sequence 
GACTCCAGCCGCGTGTTCATGTTACTCGCCGTCGTTATCCTCGTGCACCTGCTCACTGCAGGCGCGGCCGCCGTCCAGGG
CGCCGAGCCGTGCGTCCTCGTCGCCGCCTTCCTCCTGTGGCTGCTCGGCGCCGCGTTCGCCGTGCTGTCGCTCGCCGCCG
GCCAGTTCCCCGTTCTTGCTGCCACCGCTGCCACCATCGCGACCACGCTCCGCAGCTACCTGATTGGAGGNNTNTNNTTG
CCCGTCTTCTTGGGGAGGTCTCATACCCGCATCGCTGCGGCGTGCAAGCGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis