Browse Element(s) Details


Os.7478.1.S1_at

Description gb:AK102123.1
DB_XREF= gi:32987332
TID=Os.7478.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C72761(E2193),AU056875(S20945), AU056876(S20945) correspond to a region of the predicted gene.~Similar to Thermus thermophilus gene for homocitrate synthase, homoaconitate hydratase, and ORF,complete and pa ...
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084O09, full insert sequence.
FL= gb:AK102123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0712011/11undecaprenyl diphosphate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07090Os.4210.1.S1_at10/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07090Os.45879.1.S1_at1/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07100Os.27183.1.S1_at11/116+3387787..3389472Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g07110Os.40855.5.S1_x_at11/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_at9/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_x_at6/116+3395348..3400021hypothetical protein
LOC_Os06g07120Os.7478.1.S1_at11/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120Os.7478.2.S1_x_at10/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130Os.34965.2.S1_s_at11/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07130Os.7011.1.S2_x_at1/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07140Os.4216.1.S1_a_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140Os.4216.2.S1_x_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150OsAffx.22574.1.S1_at8/116+3424691..3425038hypothetical protein
LOC_Os06g07160Os.33725.1.S1_at11/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07160Os.51581.1.S1_at1/116+3427705..3432478metaxin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019408biological_processdolichol biosynthesis
GO:0045547molecular_functiondehydrodolichyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7478.1.S1_at--952--9211Chr06:3406151..3406175 (25 bp)
TCCACTTCTGAGATTGTCAATGCGG
LOC_Os06g07120
Os.7478.1.S1_at--801--9471Chr06:3406157..3406181 (25 bp)
TCTGAGATTGTCAATGCGGTCAATA
LOC_Os06g07120
Os.7478.1.S1_at--526--7911Chr06:3406298..3406322 (25 bp)
GGTTGCCCCGATCCTGACATTGTGA
LOC_Os06g07120
Os.7478.1.S1_at--920--7171Chr06:3406433..3406457 (25 bp)
GTCTGGGCCATACTCCAGTACCAAA
LOC_Os06g07120
Os.7478.1.S1_at--835--8431Chr06:3406438..3406462 (25 bp)
GGCCATACTCCAGTACCAAAGAGTT
LOC_Os06g07120
Os.7478.1.S1_at--498--8771Chr06:3406574..3406598 (25 bp)
TGTATTCTCCTGTGGTATCTCCTGG
LOC_Os06g07120
Os.7478.1.S1_at--692--9491Chr06:3406579..3406603 (25 bp)
TCTCCTGTGGTATCTCCTGGAATAT
LOC_Os06g07120
Os.7478.1.S1_at--287--6911Chr06:3406588..3406612 (25 bp)
GTATCTCCTGGAATATGAAATATAT
LOC_Os06g07120
Os.7478.1.S1_at--778--2311Chr06:3406613..3406637 (25 bp)
AAAGGATAGCTATGCCATTGTATGC
LOC_Os06g07120
Os.7478.1.S1_at--732--4871Chr06:3406621..3406645 (25 bp)
GCTATGCCATTGTATGCTTGAACAT
LOC_Os06g07120
Os.7478.1.S1_at--293--8771Chr06:3406631..3406655 (25 bp)
TGTATGCTTGAACATGTGTATGCTT
LOC_Os06g07120
Target Sequence 
TCCACTTCTGAGATTGTCAATGCGGTCAATAAGGTCTGTGCAGAAAGGAGGGATATACTGCAGAGGGAGGATGCTGACAG
TGTTGCGAATAATGGTGTGTATTCAGACATTTCAGTGGCAGATCTGGACCGCCATATGTACAGCGCTGGTTGCCCCGATC
CTGACATTGTGATCCGGACCTCAGGTGAGACTCGCCTGAGCAATTTCCTTCTGTGGCAGACGACGTTCAGTCATTTGCAG
AATCCAGACCCTCTTTGGCCGGAGTTCTCTTTCAAGCACCTTGTCTGGGCCATACTCCAGTACCAAAGAGTTCACCCTTC
TATTGAGCAAAGCAGAAATCTGGCTAAGAAGCAGCTGTAATCACATCCTCCCTGGGAGGAGATAGAAACCATCATACAAG
ATATCTGTAGTTACACAATAATCTGTATTCTCCTGTGGTATCTCCTGGAATATGAAATATATAAAGGATAGCTATGCCAT
TGTATGCTTGAACATGTGTATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis