Browse Element(s) Details


Os.27183.1.S1_at

Description gb:AK100240.1
DB_XREF= gi:32985449
TID=Os.27183.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana RING-H2 finger protein RHX1a mRNA, partial cds.(AF079184) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054P08, full insert sequence.
FL= gb:AK100240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0710011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07080Os.4209.1.S1_a_at11/116+3362870..3367262Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os06g07090Os.4210.1.S1_at10/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07090Os.45879.1.S1_at1/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07100Os.27183.1.S1_at11/116+3387787..3389472Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g07110Os.40855.5.S1_x_at11/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_at9/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_x_at6/116+3395348..3400021hypothetical protein
LOC_Os06g07120Os.7478.1.S1_at11/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120Os.7478.2.S1_x_at10/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130Os.34965.2.S1_s_at11/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07130Os.7011.1.S2_x_at1/116+3407661..3417592Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27183.1.S1_at--1042--2871Chr06:3388301..3388325 (25 bp)
AAGGGCGACAGCTTCTCGGTGTCCA
LOC_Os06g07100
Os.27183.1.S1_at--990--3211Chr06:3388278..3388302 (25 bp)
CAAGATTTGGCAGTGGCCGCGGCAA
LOC_Os06g07100
Os.27183.1.S1_at--1051--4271Chr06:3388165..3388189 (25 bp)
CCTGATGCTGATTTCCATGGTGTGT
LOC_Os06g07100
Os.27183.1.S1_at--377--4831Chr06:3388106..3388130 (25 bp)
GCTCATCTTTTTAACACCGTATTAA
LOC_Os06g07100
Os.27183.1.S1_at--457--9471Chr06:3388077..3388101 (25 bp)
TCTGTTCATAGCCAATTCGTTCCAT
LOC_Os06g07100
Os.27183.1.S1_at--918--6691Chr06:3388059..3388083 (25 bp)
GTTCCATTCTACTTTTGCTGTTCGA
LOC_Os06g07100
Os.27183.1.S1_at--1045--10711Chr06:3388045..3388069 (25 bp)
TTGCTGTTCGATTGCATCACCTCGT
LOC_Os06g07100
Os.27183.1.S1_at--304--391Chr06:3388030..3388054 (25 bp)
ATCACCTCGTGTGTTCATGATGAAC
LOC_Os06g07100
Os.27183.1.S1_at--364--6171Chr06:3387990..3388014 (25 bp)
GAGGATTTCTTACTCTGCAGAATTA
LOC_Os06g07100
Os.27183.1.S1_at--484--9231Chr06:3387902..3387926 (25 bp)
TCCTATGGGCTATGGATATCCACCA
LOC_Os06g07100
Os.27183.1.S1_at--505--6511Chr06:3387888..3387912 (25 bp)
GATATCCACCATTTGCAACGCTGGA
LOC_Os06g07100
Target Sequence 
AAGGGCGACAGCTTCTCGGTGTCCAAGATTTGGCAGTGGCCGCGGCAAGGCAAGGGGAAGCTGCCGGTGCTCGCCTCCGA
CGACTCGCCGGCGGTGGACGGCCGGCTGCCGTGGCCGAGGAGAAGCCCCGGGGNCTTCCTGATGCTGATTTCCATGGTGT
GTTTNCAATTTGCAAAACTTTTTCAGAGCTAATTCNGCTCATCTTTTTAACACCGTATTAATCAATCTGTTCATAGCCAA
TTCGTTCCATTCTACTTTTGCTGTTCGATTGCATCACCTCGTGTGTTCATGATGAACAAATAGCTTCATATAGAGGATTT
CTTACTCTGCAGAATTAGTATTGGTAGTTGCAATACTAAACAANANAGAGGCTAAATTTATGAACNAAAAATACTAGTTT
ATTTCCTATGGGCTATGGATATCCACCATTTGCAACGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis