Browse Element(s) Details


Os.4210.1.S1_at

Description gb:AK059117.1
DB_XREF= gi:32969135
TID=Os.4210.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E10, full insert sequence.
FL= gb:AK101686.1 gb:AK059117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0709010/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein
LOC_Os06g07070Os.4208.1.S1_at11/116+3359543..3362524Protein kinase domain containing protein, expressed
LOC_Os06g07080Os.4209.1.S1_a_at11/116+3362870..3367262Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os06g07090Os.4210.1.S1_at10/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07090Os.45879.1.S1_at1/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07100Os.27183.1.S1_at11/116+3387787..3389472Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g07110Os.40855.5.S1_x_at11/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_at9/116+3395348..3400021hypothetical protein
LOC_Os06g07110Os.40360.1.S1_x_at6/116+3395348..3400021hypothetical protein
LOC_Os06g07120Os.7478.1.S1_at11/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120Os.7478.2.S1_x_at10/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130Os.34965.2.S1_s_at11/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07130Os.7011.1.S2_x_at1/116+3407661..3417592Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0030121cellular_componentAP-1 adaptor complex
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4210.1.S1_at--1002--4271Chr06:3385107..3385131 (25 bp)
CCTGCTGGATTGTAGTTTGACCTGT
LOC_Os06g07090
Os.4210.1.S1_at--729--5831Chr06:3385125..3385149 (25 bp)
GACCTGTGTCTATAATGTTGTGATA
LOC_Os06g07090
Os.4210.1.S1_at--893--8831Chr06:3385145..3385169 (25 bp)
TGATAGCTCTTCCAACTGCTGCAAG
LOC_Os06g07090
Os.4210.1.S1_at--646--3831Chr06:3385160..3385184 (25 bp)
CTGCTGCAAGCAAAGGCGAGTTTTT
LOC_Os06g07090
Os.4210.1.S1_at--99--4931Chr06:3385215..3385239 (25 bp)
GCTTGCCTTCTAGTGAGTTATGTAC
LOC_Os06g07090
Os.4210.1.S1_at--683--2131Chr06:3385238..3385262 (25 bp)
ACACGACTTAGCTGGTTTTGGCCAT
LOC_Os06g07090
Os.4210.1.S1_at--1052--10831Chr06:3385255..3385279 (25 bp)
TTGGCCATTCATTCTTCCTTTCTAT
LOC_Os06g07090
Os.4210.1.S1_at--484--10191Chr06:3385277..3385301 (25 bp)
TATATTGTATAGTAGCCGGCAGCAA
LOC_Os06g07090
Os.4210.1.S1_at--324--4851Chr06:3385307..3385331 (25 bp)
GCTACATCTTCAGTTTTGGCAAAAT
LOC_Os06g07090
Os.4210.1.S1_at--979--3571Chr06:3385337..3385361 (25 bp)
CATATGGTGCTGTATATCACTTGAG
LOC_Os06g07090
Os.4210.1.S1_at--766--5831NONE
GACCTGTTCATGGTAAACCCACTGG
NONE
Target Sequence 
CCTGCTGGATTGTAGTTTGACCTGTGTCTATAATGTTGTGATAGCTCTTCCAACTGCTGCAAGCAAAGGCGAGTTTTTCT
TTTTACTTTTTTCTGCTCTTCCCCTTTTGCTTGCCTTCTAGTGAGTTATGTACACGACTTAGCTGGTTTTGGCCATTCAT
TCTTCCTTTCTATATTGTATAGTAGCCGGCAGCAATTAATGCTACATCTTCAGTTTTGGCAAAATGTATTCATATGGTGC
TGTATATCACTTGAGGATAACTAAAATTTTCAGCCTCCCCCTCATTTCAGGCAGCANAAGGAATGTGTTGTATCATNANA
TTGTTCAATGNAATTATTTGTTTTTTNGGGTTTACGACCTGTTCATGGTAAACCCACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis