Browse Element(s) Details


Os.7478.2.S1_x_at

Description gb:AK069186.1
DB_XREF= gi:32979210
TID=Os.7478.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C72761(E2193),AU056875(S20945), AU056876(S20945) correspond to a region of the predicted gene.~Similar to Thermus thermophilus gene for homocitrate synthase, homoaconitate hydratase, and ORF,complete and pa ...
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009G19, full insert sequence.
FL= gb:AK069186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4168010/11undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g0712010/11undecaprenyl diphosphate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed
LOC_Os07g41660Os.57169.1.S1_at11/117+24964271..24966604expressed protein
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41710Os.17625.1.S1_at11/117+24992226..24994683expressed protein
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019408biological_processdolichol biosynthesis
GO:0045547molecular_functiondehydrodolichyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7478.2.S1_x_at--1106--4672Chr07:24974333..24974357 (25 bp)
GCGGTCAATAAGGTCTGTGCAGAAA
LOC_Os07g41680
Os.7478.2.S1_x_at--1086--252Chr07:24974445..24974469 (25 bp)
ATATGTACAGCGCTGGTTGCCCCGA
LOC_Os07g41680
Os.7478.2.S1_x_at--417--5992Chr07:24974498..24974522 (25 bp)
GAGACTCGCCTGAGCAATTTCCTTC
LOC_Os07g41680
Os.7478.2.S1_x_at--104--3132Chr07:24974513..24974537 (25 bp)
AATTTCCTTCTGTGGCAGACGACGT
LOC_Os07g41680
Os.7478.2.S1_x_at--479--1392Chr07:24974529..24974553 (25 bp)
AGACGACGTTCAGTCATTTGCAGAA
LOC_Os07g41680
Os.7478.2.S1_x_at--15--212Chr07:24974544..24974568 (25 bp)
ATTTGCAGAATCCAGACCCTCTTTG
LOC_Os07g41680
Os.7478.2.S1_x_at--831--10232Chr07:24974565..24974589 (25 bp)
TTTGGCCGGAGTTCTCTTTCAAGCA
LOC_Os07g41680
Os.7478.2.S1_x_at--1151--3652Chr07:24974580..24974604 (25 bp)
CTTTCAAGCACCTTGTCTGGGCCAT
LOC_Os07g41680
Os.7478.2.S1_x_at--585--1452Chr07:24974658..24974682 (25 bp)
AGAAGCAGCTGTAATCACATCCTCC
LOC_Os07g41680
Os.7478.2.S1_x_at--542--2112Chr07:24974810..24974834 (25 bp)
ACATGTGTATGCTTGAGTTGGTCCA
LOC_Os07g41680
Os.7478.2.S1_x_at--972--10291NONE
TTTCCCTGAACATTTTGTTCGCTGT
NONE
Target Sequence 
GCGGTCAATAAGGTCTGTGCAGAAAGGAGGGATATACTGCAGAGGGAGGATGNTGACAGTGTTGCGAATAATGGTGTGNA
TTCAGANATTTCAGTGGCAGATCTGGACCNCCATATGTACAGCGCTGGTTGCCCCGATCCNTGANATTGTGATCCGGACC
TCAGGNGAGACTCGCCTGAGCAATTTCCTTCTGTGGCAGACGACGTTCAGTCATTTGCAGAATCCAGACCCTCTTTGGCC
GGAGTTCTCTTTCAAGCACCTTGTCTGGGCCATNACTNCAGTACCAAAGAGTTCACCCTTNTATTGAGCAAAGCAGAAAT
CTGGCTAAGAAGCAGCTGTAATCACATCCTCCCTGGGAGGAGATAGAAACCATCATACAAGATATCTGTAGTTACACAAT
AATCTGTATTCTCCTNTGNTATCTCCTNGAATNTGAAATATANAAANNANAGNTANNNNNTNNNNTGNNNGCNNGCCAAA
CATGTGTATGCTTGAGTTGGTCCAAATGTGTGAAATGTAATAACATTTGGTCTAAGCAAAGTGCCTTANTTTCCCTGAAC
ATTTTGTTCGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7478.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis