Browse Element(s) Details


Os.54802.1.S1_at

Description gb:AK106797.1
DB_XREF= gi:32992006
TID=Os.54802.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B06, full insert sequence.
FL= gb:AK106797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4165010/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed
LOC_Os07g41660Os.57169.1.S1_at11/117+24964271..24966604expressed protein
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54802.1.S1_at--185--10471Chr07:24960006..24960030 (25 bp)
TTACCAACTTACCATCCTCGATGAT
LOC_Os07g41650
Os.54802.1.S1_at--322--6051Chr07:24959958..24959982 (25 bp)
GAGTTGCATTGCAGGCTCACCAAAC
LOC_Os07g41650
Os.54802.1.S1_at--933--7591Chr07:24959922..24959946 (25 bp)
GGGAATTCAGTTACCACATGTGACA
LOC_Os07g41650
Os.54802.1.S1_at--262--2231Chr07:24959900..24959924 (25 bp)
ACAAGGCTGTTACCAAATGAGTTCC
LOC_Os07g41650
Os.54802.1.S1_at--410--5591Chr07:24959864..24959888 (25 bp)
GAAATCCTAGAGACGATACTGCCAT
LOC_Os07g41650
Os.54802.1.S1_at--989--6471Chr07:24959850..24959874 (25 bp)
GATACTGCCATATCATATCCGTCAG
LOC_Os07g41650
Os.54802.1.S1_at--376--791Chr07:24959812..24959836 (25 bp)
ATGTGTCTGAATCTTCTGACAGGAC
LOC_Os07g41650
Os.54802.1.S1_at--756--1091Chr07:24959659..24959683 (25 bp)
AGTGGCTCCGGCTGTAGATCATCGC
LOC_Os07g41650
Os.54802.1.S1_at--772--531Chr07:24959639..24959663 (25 bp)
ATCGCCGATTCTTCACAAGTTCAGA
LOC_Os07g41650
Os.54802.1.S1_at--216--2331Chr07:24959615..24959639 (25 bp)
AAAGTTCAGACTGCTGCTGGTTCCT
LOC_Os07g41650
Os.54802.1.S1_at--1003--3571Chr07:24959498..24959522 (25 bp)
CATATGTAGTGAGATGAGCAGCCCC
NONE
Target Sequence 
TTACCAACTTACCATCCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAGTCTTG
ATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATA
CTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTNNTGTTCGGGGAGTACAA
CTNNAAAGGGCCAGGNGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCCGTTCA
TCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGATCATCGCCGATTCTTCACAAGTTCAGAAAGTTCAG
ACTGCTGCTGGTTCCTTCTCCACTGCAGTCTGCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATG
TACCATGTAACAAACTTTGACATACATCCATATGTAGTGAGATGAGCAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis