Browse Element(s) Details


OsAffx.16677.1.S1_at

Description tigr:9635.m04162
TID=OsAffx.16677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4160011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16677.1.S1_at--535--8311Chr07:24933174..24933198 (25 bp)
GGCTCCCTCTCGTGCTACAGCTACA
LOC_Os07g41600
OsAffx.16677.1.S1_at--667--1511Chr07:24933145..24933169 (25 bp)
AGCAGCCTACGACCAGTCGTCATAT
LOC_Os07g41600
OsAffx.16677.1.S1_at--244--3371Chr07:24933143..24933167 (25 bp)
CAGCCTACGACCAGTCGTCATATTA
LOC_Os07g41600
OsAffx.16677.1.S1_at--584--9931Chr07:24933138..24933162 (25 bp)
TACGACCAGTCGTCATATTACGGCG
LOC_Os07g41600
OsAffx.16677.1.S1_at--515--5851Chr07:24933135..24933159 (25 bp)
GACCAGTCGTCATATTACGGCGGCG
LOC_Os07g41600
OsAffx.16677.1.S1_at--114--4251Chr07:24933133..24933157 (25 bp)
CCAGTCGTCATATTACGGCGGCGGC
LOC_Os07g41600
OsAffx.16677.1.S1_at--1099--4551Chr07:24933078..24933102 (25 bp)
GCGCCCGCCGGGTACTACGGCGTGG
LOC_Os07g41600
OsAffx.16677.1.S1_at--850--1854Chr09:6551728..6551752 (25 bp)
ACGACCACCAGGGATGGTACTACGG
NONE
OsAffx.16677.1.S1_at--190--1714Chr09:6551731..6551755 (25 bp)
ACCACCAGGGATGGTACTACGGCAA
NONE
OsAffx.16677.1.S1_at--905--1714Chr09:6551734..6551755 (22 bp)
ACCAGGGATGGTACTACGGCAACCG
NONE
OsAffx.16677.1.S1_at--175--7832Chr07:24933017..24933041 (25 bp)
GGTACTACGGCAACCGGCAGCCGTA
LOC_Os07g41600
Target Sequence 
GGCTCCCTCTCGTGCTACAGCTACAACCCAGCAGCCTACGACCAGTCGTCATATTACGGCGGCGGCGGCTACGGCTACGG
CGGCGGCGCGTTCCAGGCGCCCGCCGGGTACTACGGCGTGGCACCGCCGCCGGCGGCGCCCTACGACCACCAGGGATGGT
ACTACGGCAACCGGCAGCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis