Browse Element(s) Details


Os.49795.1.S1_at

Description gb:AK112118.1
DB_XREF= gi:37988781
TID=Os.49795.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C11, full insert sequence.
FL= gb:AK111621.1 gb:AK112118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4158011/11CCAAT-binding transcription factor subunit A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41530NANA7+24892402..24895513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41540OsAffx.16676.1.S1_at11/117+24900227..24901567Sulfotransferase domain containing protein
LOC_Os07g41550OsAffx.28860.1.S1_at11/117+24903637..24904011hypothetical protein
LOC_Os07g41560NANA7+24904606..24905140Flavonol sulfotransferase, putative
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49795.1.S1_at--1088--1711Chr07:24919780..24919804 (25 bp)
ACCACCAGGATGCTTCCCGGAACAA
LOC_Os07g41580
Os.49795.1.S1_at--596--6331Chr07:24919772..24919796 (25 bp)
GATGCTTCCCGGAACAATGGCGGAT
LOC_Os07g41580
Os.49795.1.S1_at--223--2231Chr07:24919759..24919783 (25 bp)
ACAATGGCGGATACGGCATGTACGG
LOC_Os07g41580
Os.49795.1.S1_at--106--9411Chr07:24919676..24919700 (25 bp)
TCGTCAGCTGGGTACGCGCAGCCGC
LOC_Os07g41580
Os.49795.1.S1_at--168--6471Chr07:24919555..24919579 (25 bp)
GATACGGCCGGCAAGACAGGCTATG
LOC_Os07g41580
Os.49795.1.S1_at--1062--5651Chr07:24919541..24919565 (25 bp)
GACAGGCTATGAGCTTGCTTTCTTG
LOC_Os07g41580
Os.49795.1.S1_at--906--691Chr07:24919533..24919557 (25 bp)
ATGAGCTTGCTTTCTTGGTTGGTGT
LOC_Os07g41580
Os.49795.1.S1_at--62--951Chr07:24919488..24919512 (25 bp)
AGGACATGTCGGGTTAATTAATCTT
LOC_Os07g41580
Os.49795.1.S1_at--1139--10491Chr07:24919471..24919495 (25 bp)
TTAATCTTAATCTCTGTTTTTTCAC
LOC_Os07g41580
Os.49795.1.S1_at--783--9551Chr07:24919413..24919437 (25 bp)
TCTTTCCTTTTCTCAATGTGCTAAA
LOC_Os07g41580
Os.49795.1.S1_at--666--8271Chr07:24919373..24919397 (25 bp)
GGCTAAATTCTCTACTAATTCGCTT
LOC_Os07g41580
Target Sequence 
ACCACCAGGATGCTTCCCGGAACAATGGCGGATACGGCATGTACGGCGGCGGCGGCGGCATGATCATGATGATGGGACAG
CCTATGTACGGCTCGCCGCCGGCGTCGTCAGCTGGGTACGCGCAGCCGCCGCCGCCCCACCACCACCACCACCAGATGGT
GATGGGAGGGAAAGGTGCGTATGGCCATGGCGGCGGCGGCGGCGGCGGGCCCTCCCCGTCGTCGGGATACGGCCGGCAAG
ACAGGCTATGAGCTTGCTTTCTTGGTTGGTGTTTTGGTAATTAATTAATCAGAGGACATGTCGGGTTAATTAATCTTAAT
CTCTGTTTTTTCACTCTTTTTTTTTACCTTTCTTTCTCTCTCTTTTATCTTTCCTTTTCTCAATGTGCTAAAATGAGTCA
ATTATATGGCTAAATTCTCTACTAATTCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis