Browse Element(s) Details


Os.56189.1.S1_at

Description gb:AK109579.1
DB_XREF= gi:32994788
TID=Os.56189.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A03, full insert sequence.
FL= gb:AK109579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41560NANA7+24904606..24905140Flavonol sulfotransferase, putative
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56189.1.S1_at--18--4172Chr07:24930748..24930772 (25 bp)
CGCCGAGCAGCGTGTCCGGGCTCAT
LOC_Os07g41590
Os.56189.1.S1_at--767--9331Chr07:24930846..24930870 (25 bp)
TCGCCGGAGCGGATATCCTGGCTGT
LOC_Os07g41590
Os.56189.1.S1_at--1141--1711Chr07:24931003..24931027 (25 bp)
ACCAGGACAGGCAGCGCGACTACGC
LOC_Os07g41590
Os.56189.1.S1_at--733--1831Chr07:24931093..24931117 (25 bp)
ACGCGTTCTACATCTTCGACGACCT
LOC_Os07g41590
Os.56189.1.S1_at--921--9331Chr07:24931117..24931141 (25 bp)
TCGCCGACAGCAAGAGGCTGCTCAC
LOC_Os07g41590
Os.56189.1.S1_at--223--10051Chr07:24931191..24931215 (25 bp)
TAGTGCTCCACATTCTTGAACTTGC
LOC_Os07g41590
Os.56189.1.S1_at--202--10411Chr07:24931203..24931227 (25 bp)
TTCTTGAACTTGCAGTAGCCGACAT
LOC_Os07g41590
Os.56189.1.S1_at--279--6971Chr07:24931217..24931241 (25 bp)
GTAGCCGACATTACAGTTTGCTTCA
LOC_Os07g41590
Os.56189.1.S1_at--926--1191Chr07:24931231..24931255 (25 bp)
AGTTTGCTTCACTGTATCGCTAGCT
LOC_Os07g41590
Os.56189.1.S1_at--431--9491Chr07:24931258..24931282 (25 bp)
TCTCCACTCACACAATTTCTCATTT
LOC_Os07g41590
Os.56189.1.S1_at--825--5211Chr07:24931310..24931334 (25 bp)
GAATTCAACGAGACGAGCTGTTCAT
LOC_Os07g41590
Target Sequence 
CGCCGAGCAGCGTGTCCGGGCTCATCGCGCTGCAGCCGTTCTTCGCCGGCGAGACGCCGACCGCCTCCGAGCAGCGGCTC
CGCGACGCGCCGTTCGGGTCGCCGGAGCGGATATCCTGGCTGTGGCGCGCGTTCCTCCCACCCGGCGCCACGCGGGACCA
CGAGGCGGCCAACGTGCCCGCCGCGCTCCGGCGCGACGCCGAGCGGCGCCGCGCGTTCCCGCCGACCATGGTCTGCGTCG
GCGGGTGGGACGCGCACCAGGACAGGCAGCGCGACTACGCCGACGCCCTCCGCGCCGCGGGCGGCGCCGAGGAGGTCGTC
GTCGCCGAGTTCCCCGACGCCATCCACGCGTTCTACATCTTCGACGACCTCGCCGACAGCAAGAGGCTGCTCACCGAAGT
CACCGCCTTCGTCAACCGCCGCCGCCTCCTAGTGCTCCACATTCTTGAACTTGCAGTAGCCGACATTACAGTTTGCTTCA
CTGTATCGCTAGCTCGTCTCCACTCACACAATTTCTCATTTGATTTGATTTGATTTGATTCATACGATGAATTCAACGAG
ACGAGCTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis