Browse Element(s) Details


OsAffx.16678.1.S1_at

Description tigr:9635.m04164
TID=OsAffx.16678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4162011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed
LOC_Os07g41660Os.57169.1.S1_at11/117+24964271..24966604expressed protein
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16678.1.S1_at--22--731Chr07:24951701..24951725 (25 bp)
ATGATTACAGAGCAGCCTTGGGCCT
LOC_Os07g41620
OsAffx.16678.1.S1_at--262--2911Chr07:24950487..24950511 (25 bp)
AAGGAGATGGTGTCAACGGTTTGCA
LOC_Os07g41620
OsAffx.16678.1.S1_at--915--9531Chr07:24950446..24950470 (25 bp)
TCTAGATTTAGCTTCGGAGGTCATG
LOC_Os07g41620
OsAffx.16678.1.S1_at--280--8031Chr07:24950337..24950455 (25 bp)
GGAGGTCATGGATGTTGCTGCCTTC
LOC_Os07g41620
OsAffx.16678.1.S1_at--62--9191Chr07:24950319..24950343 (25 bp)
TGCCTTCGGGCTTGGTACAACCGAA
LOC_Os07g41620
OsAffx.16678.1.S1_at--525--2591Chr07:24950301..24950325 (25 bp)
AACCGAAATTTCTCAACGTACAGCA
LOC_Os07g41620
OsAffx.16678.1.S1_at--489--7751Chr07:24950192..24950216 (25 bp)
GGTGAGGACGTACACAACTATCTTT
LOC_Os07g41620
OsAffx.16678.1.S1_at--60--2531Chr07:24950177..24950201 (25 bp)
AACTATCTTTTGTGAGGTTGCCAAC
LOC_Os07g41620
OsAffx.16678.1.S1_at--809--111Chr07:24950119..24950143 (25 bp)
ATTCTATCCTTTCTTGATGCTCTTG
LOC_Os07g41620
OsAffx.16678.1.S1_at--894--5511Chr07:24950021..24950045 (25 bp)
GAAAATCACCCATGATCTGGATGCA
LOC_Os07g41620
OsAffx.16678.1.S1_at--1058--8551Chr07:24950004..24950028 (25 bp)
TGGATGCACTTTCCCATAAGTTTGA
LOC_Os07g41620
Target Sequence 
ATGATTACAGAGCAGCCTTGGGCCTGCGTACGCCCCCTGATATGTTCCGTAAGGAGAAGTACAAAATTGCGGTTATCATG
CAGAAGATGTATTCTTCCAGTTCTAAGATTCTGAATGCAGACGAGAAGGAGATGGTGTCAACGGTTTGCAGGAAAGCACG
ATTAGCTCTAGATTTAGCTTCGGAGGTCATGGATGTTGCTGCCTTCGGGCTTGGTACAACCGAAATTTCTCAACGTACAG
CAGATCAGATGGTGAGGACGTACACAACTATCTTTTGTGAGGTTGCCAACGAGTTATATCATAATAGGGTCACAATGGAA
AATATTCTATCCTTTCTTGATGCTCTTGGAGGCTTAGGGGCAATAACACATATCTTGGTTCAAGATACCGTGGATAAGCT
CCATAATGGTCTTTTAAAAAAGAAAATCACCCATGATCTGGATGCACTTTCCCATAAGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis