Browse Element(s) Details


Os.4881.1.S1_s_at

Description gb:CA756340
DB_XREF= gi:25800379
DB_XREF=BR030040000_PLATE_E09_69_070.ab1
CLONE=BR030040000_PLATE_E09_69_070.ab1
TID=Os.4881.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4881 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565855.1 (A.thaliana) putative farnesylated protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g416009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4881.1.S1_s_at--339--4531Chr07:24935168..24935191 (24 bp)
GCCGCCATTCTCATGGCAGACAAGA
LOC_Os07g41600
Os.4881.1.S1_s_at--192--5051NONE
GCAGACAAGATCTCCACGGTTGTGC
NONE
Os.4881.1.S1_s_at--473--2811Chr07:24934149..24934172 (24 bp)
AAGATCTCCACGGTTGTGCTCAACG
LOC_Os07g41600
Os.4881.1.S1_s_at--324--7911Chr07:24934138..24934162 (25 bp)
GGTTGTGCTCAACGTTGACCTCGAA
LOC_Os07g41600
Os.4881.1.S1_s_at--815--4831Chr07:24934132..24934156 (25 bp)
GCTCAACGTTGACCTCGAATGCGAT
LOC_Os07g41600
Os.4881.1.S1_s_at--635--6651Chr07:24934125..24934149 (25 bp)
GTTGACCTCGAATGCGATCGATGCT
LOC_Os07g41600
Os.4881.1.S1_s_at--488--5271Chr07:24934116..24934140 (25 bp)
GAATGCGATCGATGCTACAAGAAGA
LOC_Os07g41600
Os.4881.1.S1_s_at--762--5351Chr07:24934096..24934120 (25 bp)
GAAGATCAGAAGAGTCCTTTGCAGG
LOC_Os07g41600
Os.4881.1.S1_s_at--321--2791NONE
AAGAGTCCTTTGCAGGATCCAAGAT
NONE
Os.4881.1.S1_s_at--982--4991Chr07:24933779..24934100 (25 bp)
GCAGGATCCAAGATAAGGCGAACAT
LOC_Os07g41600
Os.4881.1.S1_s_at--252--8391Chr07:24933763..24933787 (25 bp)
GGCGAACATCAAGACGATCTCGTAC
LOC_Os07g41600
Target Sequence 
GCCGCCATTCTCATGGCAGACAAGATCTCCACGGTTGTGCTCAACGTTGACCTCGAATGCGATCGATGCTACAAGAAGAT
CAGAAGAGTCCTTTGCAGGATCCAAGATAAGGCGAACATCAAGACGATCTCGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4881.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis