Browse Element(s) Details


Os.16757.1.S1_s_at

Description gb:AK102747.1
DB_XREF= gi:32987956
TID=Os.16757.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106K01, full insert sequence.
FL= gb:AK102747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4164011/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed
LOC_Os07g41660Os.57169.1.S1_at11/117+24964271..24966604expressed protein
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16757.1.S1_s_at--724--6211Chr07:24958363..24958387 (25 bp)
GAGGCCGGACTCCAGAAATTCTGCA
LOC_Os07g41640
Os.16757.1.S1_s_at--1135--5591Chr07:24958377..24958401 (25 bp)
GAAATTCTGCAATGTCTGACCAAGA
LOC_Os07g41640
Os.16757.1.S1_s_at--128--1211Chr07:24958469..24958493 (25 bp)
AGTTTGACTGATATGGCCTCTGCTT
LOC_Os07g41640
Os.16757.1.S1_s_at--205--8191Chr07:24958604..24958628 (25 bp)
GGAAGCGCAACCTCATTAGACGTAT
LOC_Os07g41640
Os.16757.1.S1_s_at--737--6491Chr07:24958642..24958666 (25 bp)
GATATGGTAATTGGACCCCAGCAGA
LOC_Os07g41640
Os.16757.1.S1_s_at--426--5931Chr07:24958697..24958721 (25 bp)
GAGCATCGACATCTTTTTTCATACA
LOC_Os07g41640
Os.16757.1.S1_s_at--369--10411Chr07:24958714..24958738 (25 bp)
TTCATACACGTGTTCCCTTGTTTTA
LOC_Os07g41640
Os.16757.1.S1_s_at--153--10771Chr07:24958731..24958755 (25 bp)
TTGTTTTACTGTTAGCTTCCCACTT
LOC_Os07g41640
Os.16757.1.S1_s_at--1--2051Chr07:24958752..24958776 (25 bp)
ACTTTCAGGCTTTCTGTCACCAGAT
LOC_Os07g41640
Os.16757.1.S1_s_at--476--6431Chr07:24958834..24958858 (25 bp)
GATCATTGCTTCTCTTATGTTTTCC
LOC_Os07g41640
Os.16757.1.S1_s_at--102--6791Chr07:24958852..24958876 (25 bp)
GTTTTCCTCCGGAGTCTGGACTATA
LOC_Os07g41640
Target Sequence 
GAGGCCGGACTCCAGAAATTCTGCAATGTCTGACCAAGAGCTTGCAGCCATACANACAAACTCTAGTGAAGATAAACAAA
CAGGAGCTGATCAGCCAGCAGAAGTTAGTTTGACTGATATGGCCTCTGCTTTTGCAGAGGACCAGAAACAAACAGTTCTA
GGAAAGCGACCTAGGGATGATGATGCTGAACAACNTTGCAATGGGGAAGTAGGCATAGATGTTGGCAAATTGTGAAGTTT
GGGAAGCGCAACCTCATTAGACGTATGTACATAGCTATAGATATGGTAATTGGACCCCAGCAGAGGGGTTTTTTACTAGG
TTGCTGATATCAGTGAGCATCGACATCTTTTTTCATACACGTGTTCCCTTGTTTTACTGTTAGCTTCCCACTTTCAGGCT
TTCTGTCACCAGATACAGAGGTTGCAAACTAAATATTACCCTTACCAGTCATATTGTATAGCAGTCTGATTGATCATTGC
TTCTCTTATGTTTTCCTCCGGAGTCTGGACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16757.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis