Browse Element(s) Details


Os.54794.1.S1_x_at

Description gb:AK106786.1
DB_XREF= gi:32991995
TID=Os.54794.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H12, full insert sequence.
FL= gb:AK106786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g416945/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed
LOC_Os07g41660Os.57169.1.S1_at11/117+24964271..24966604expressed protein
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41710Os.17625.1.S1_at11/117+24992226..24994683expressed protein
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54794.1.S1_x_at--101--5631Chr07:24986068..24986092 (25 bp)
GACACAGAATATCTTGTTCAACCAA
LOC_Os07g41694
Os.54794.1.S1_x_at--1057--6751Chr07:24986083..24986107 (25 bp)
GTTCAACCAATTGCTCAACCTCAGG
LOC_Os07g41694
Os.54794.1.S1_x_at--630--2631Chr07:24986099..24986123 (25 bp)
AACCTCAGGCCATGGCGGTTGGAAA
LOC_Os07g41694
Os.54794.1.S1_x_at--624--5551Chr07:24986120..24986144 (25 bp)
GAAACGACTTTGATGCAGCTGAGGC
LOC_Os07g41694
Os.54794.1.S1_x_at--459--6291Chr07:24986185..24986209 (25 bp)
GATGATGGTGGTACGGACCTGCCCT
LOC_Os07g41694
Os.54794.1.S1_x_at--1075--3991Chr11:19032349..19032373 (25 bp)
CGTGCTCCGGCTAGGCTAAAATCAA
NONE
Os.54794.1.S1_x_at--1073--9731Chr11:19032328..19032352 (25 bp)
TCAATTAATTAGTCTCCGGGAGGGT
NONE
Os.54794.1.S1_x_at--1028--6371Chr11:19032274..19032298 (25 bp)
GATCCGAGTTCAGTTTAGGCGATGA
NONE
Os.54794.1.S1_x_at--95--8871Chr11:19032252..19032276 (25 bp)
TGATGATTCAGCTGCAGCTTCGACT
NONE
Os.54794.1.S1_x_at--508--1551Chr11:19032237..19032261 (25 bp)
AGCTTCGACTGCAGCTGTGTCCGCA
NONE
Os.54794.1.S1_x_at--524--3391Chr11:19032226..19032250 (25 bp)
CAGCTGTGTCCGCATTTGTAATTAC
NONE
Target Sequence 
GACACAGAATATCTTGTTCAACCAATTGCTCAACCTCAGGCCATGGCGGTTGGAAACGACTTTGATGCAGCTGAGGCTGA
TGATGCTGATGAAGATAGAGATGAGGTTGATGACGATGATGATGGTGGTACGGACCTGCCCTCGTCCTCGCAGGGCGTGC
TCCGGCTAGGCTAAAATCAATTAATTAGTCTCCGGGAGGGTAATTAACGGGGGTGATTAAGATTAAGCTCGATCCGAGTT
CAGTTTAGGCGATGATGATTCAGCTGCAGCTTCGACTGCAGCTGTGTCCGCATTTGTAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54794.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis