Browse Element(s) Details


Os.9870.1.S1_at

Description gb:AK109447.1
DB_XREF= gi:32994656
TID=Os.9870.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H11, full insert sequence.
FL= gb:AK109447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4174011/11PHD finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41710Os.17625.1.S1_at11/117+24992226..24994683expressed protein
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed
LOC_Os07g41760OsAffx.28863.1.S1_at11/117+25020595..25021008hypothetical protein
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9870.1.S1_at--15--4551Chr07:25015757..25015781 (25 bp)
GCGCGCCCGTCCTAAGGTGTGGCAC
LOC_Os07g41740
Os.9870.1.S1_at--1009--8371Chr07:25015782..25015806 (25 bp)
GGCGAGCCCATCCAGAGTTAAGATT
LOC_Os07g41740
Os.9870.1.S1_at--730--4251Chr07:25015815..25015839 (25 bp)
CCGTGTGGTAGGAGCAGTCTGCATA
LOC_Os07g41740
Os.9870.1.S1_at--298--291Chr07:25015837..25015861 (25 bp)
ATAGTGCAGTGCAGCGGCTATTCTT
LOC_Os07g41740
Os.9870.1.S1_at--992--8291Chr07:25015852..25015876 (25 bp)
GGCTATTCTTATTTGCAATGGCTGT
LOC_Os07g41740
Os.9870.1.S1_at--936--9011Chr07:25015865..25015889 (25 bp)
TGCAATGGCTGTAACTCGTGAGGAT
LOC_Os07g41740
Os.9870.1.S1_at--593--6871Chr07:25015914..25015938 (25 bp)
GTATGGCAGTGGCTGTAACTTGTAA
LOC_Os07g41740
Os.9870.1.S1_at--985--2511Chr07:25015949..25015973 (25 bp)
AACTTGTTAGGCATGCAGTTGTGCT
LOC_Os07g41740
Os.9870.1.S1_at--275--7591Chr07:25015984..25016008 (25 bp)
GGGCTAAGACTGCTTATCCATTGTA
LOC_Os07g41740
Os.9870.1.S1_at--393--4891Chr07:25015995..25016019 (25 bp)
GCTTATCCATTGTACTCCTAATCTA
LOC_Os07g41740
Os.9870.1.S1_at--870--851Chr07:25016051..25016075 (25 bp)
ATGGCTGTATTTAGCTGGTCTACCA
LOC_Os07g41740
Target Sequence 
GCGCGCCCGTCCTAAGGTGTGGCACGGCGAGCCCATCCAGAGTTAAGATTTGGGCTCGCCGTGTGGTAGGAGCAGTCTGC
ATAGTGCAGTGCAGCGGCTATTCTTATTTGCAATGGCTGTAACTCGTGAGGATGATTTTTAACTTTGTTAAGTTATTGTA
TGGCAGTGGCTGTAACTTGTAAGGGTGTTTTTAACTTGTTAGGCATGCAGTTGTGCTGCCCCTTAGGGGGCTAAGACTGC
TTATCCATTGTACTCCTAATCTAATCTTAATTTGGTTTTTTTTTAATTAAGTAGATGGCTGTATTTAGCTGGTCTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis