Browse Element(s) Details


Os.5498.1.S1_at

Description gb:AK066905.1
DB_XREF= gi:32976923
TID=Os.5498.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.5498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092O21, full insert sequence.
FL= gb:AK066905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4175011/1140S ribosomal protein S3-A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41710Os.17625.1.S1_at11/117+24992226..24994683expressed protein
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed
LOC_Os07g41760OsAffx.28863.1.S1_at11/117+25020595..25021008hypothetical protein
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5498.1.S1_at--1063--4851Chr07:25018549..25018573 (25 bp)
GCTATGGTGTGCTCAGGTTTGTTAT
LOC_Os07g41750
Os.5498.1.S1_at--1057--5371Chr07:25018399..25018423 (25 bp)
GAAGCTTAGGGCTCAGCGTGCTAAA
LOC_Os07g41750
Os.5498.1.S1_at--665--3391Chr07:25018386..25018410 (25 bp)
CAGCGTGCTAAATCCATGAAGTTCA
LOC_Os07g41750
Os.5498.1.S1_at--465--5751Chr07:25018359..25018383 (25 bp)
GACGGATACATGATTTCTTCTGGTT
LOC_Os07g41750
Os.5498.1.S1_at--244--2071Chr07:25018325..25018349 (25 bp)
ACTTGTATATTGACTCTGCTGTTAG
LOC_Os07g41750
Os.5498.1.S1_at--1070--4731Chr07:25018308..25018332 (25 bp)
GCTGTTAGACATGTTCTTCTGAGAC
LOC_Os07g41750
Os.5498.1.S1_at--105--11Chr07:25018132..25018156 (25 bp)
AGGACCAATGACTCCTTTACCGGAT
LOC_Os07g41750
Os.5498.1.S1_at--524--10451Chr07:25018116..25018140 (25 bp)
TTACCGGATCTTGTTACCATCCATG
LOC_Os07g41750
Os.5498.1.S1_at--617--6791Chr07:25018072..25018096 (25 bp)
GTTTTCAAAGCCTCTTACAGCTGAG
LOC_Os07g41750
Os.5498.1.S1_at--184--1611Chr07:25018054..25018078 (25 bp)
AGCTGAGATCCCAGTTGCTGCTTAA
LOC_Os07g41750
Os.5498.1.S1_at--1064--1031Chr07:25018016..25018040 (25 bp)
AGGTGATCTGATGCATGCGCTTCAT
LOC_Os07g41750
Target Sequence 
GCTATGGTGTGCTCAGGTTTGTTATGGAGAGTGGTGCTAAGGGCTGTGAGGTTATTGTGAGTGGGAAGCTTAGGGCTCAG
CGTGCTAAATCCATGAAGTTCAAGGACGGATACATGATTTCTTCTGGTTATCCTGTTAACTTGTATATTGACTCTGCTGT
TAGACATGTTCTTCTGAGACAGGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAG
GACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCCCTAAGGATGAGGATGAGTTTTCAAAGCCTCTTACAGCT
GAGATCCCAGTTGCTGCTTAAATAGAATAAGTTTAGGTGATCTGATGCATGCGCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis