Browse Element(s) Details


OsAffx.28863.1.S1_at

Description tigr:9635.m04180
TID=OsAffx.28863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4176011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed
LOC_Os07g41760OsAffx.28863.1.S1_at11/117+25020595..25021008hypothetical protein
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28863.1.S1_at--17--8151Chr07:25020639..25020663 (25 bp)
GGACACAGGCTCAGAGAACCACCAT
LOC_Os07g41760
OsAffx.28863.1.S1_at--351--9331Chr07:25020663..25020687 (25 bp)
TCGCCAGATGCGCAAATCGCAGTGT
LOC_Os07g41760
OsAffx.28863.1.S1_at--611--3791Chr07:25020699..25020723 (25 bp)
CTCCATGACCAGTGAGCTTGAGCCA
LOC_Os07g41760
OsAffx.28863.1.S1_at--707--8911Chr07:25020711..25020735 (25 bp)
TGAGCTTGAGCCACGTTGTGCACCA
LOC_Os07g41760
OsAffx.28863.1.S1_at--302--1751Chr07:25020735..25020759 (25 bp)
ACCTCCACAAGGCAAGCGTGATTTG
LOC_Os07g41760
OsAffx.28863.1.S1_at--646--8891Chr07:25020758..25020782 (25 bp)
TGAGGGCCAAGACTGACTGCAACAA
LOC_Os07g41760
OsAffx.28863.1.S1_at--1006--6191Chr07:25020789..25020813 (25 bp)
GAGGAATCTTGTGCACCATCTTGTC
LOC_Os07g41760
OsAffx.28863.1.S1_at--298--431Chr07:25020806..25020830 (25 bp)
ATCTTGTCCATCTTGCTCGTCGCTG
LOC_Os07g41760
OsAffx.28863.1.S1_at--1142--4771Chr07:25020875..25020899 (25 bp)
GCTGCCTGACCCTAGAACATGCGAG
LOC_Os07g41760
OsAffx.28863.1.S1_at--1121--1291Chr07:25020921..25020945 (25 bp)
AGATGACCAGTCAGCCAATGCTCAT
LOC_Os07g41760
OsAffx.28863.1.S1_at--28--9631Chr07:25020942..25020966 (25 bp)
TCATGGCCCGTTGGATCTGACGGAG
LOC_Os07g41760
Target Sequence 
GGACACAGGCTCAGAGAACCACCATCGCCAGATGCGCAAATCGCAGTGTGACGCCCTCAGCTCCATGACCAGTGAGCTTG
AGCCACGTTGTGCACCACCTCCACAAGGCAAGCGTGATTTGAGGGCCAAGACTGACTGCAACAAGGAAATGAGGAATCTT
GTGCACCATCTTGTCCATCTTGCTCGTCGCTGTCCTGCTTACCACAAGCCACCACCAACACCCCATTGTTGCCGCCGCTG
CCTGACCCTAGAACATGCGAGGAGGATGTGGGTGGGGGGAGAAGATGACCAGTCAGCCAATGCTCATGGCCCGTTGGATC
TGACGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis