Browse Element(s) Details


Os.17625.1.S1_at

Description gb:AK068225.1
DB_XREF= gi:32978243
TID=Os.17625.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145L10, full insert sequence.
FL= gb:AK068225.1 gb:AK102811.1 gb:AK109383.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4171011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41710Os.17625.1.S1_at11/117+24992226..24994683expressed protein
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17625.1.S1_at--453--1411Chr07:24993957..24993981 (25 bp)
AGAAATTGCTTTGGTTCTCTCCGAA
LOC_Os07g41710
Os.17625.1.S1_at--832--10571Chr07:24993971..24993995 (25 bp)
TTCTCTCCGAAGATGACCACTTTGT
LOC_Os07g41710
Os.17625.1.S1_at--375--8091Chr07:24993996..24994169 (25 bp)
GGACGCCTCCAGTCACAAGGGTTGT
LOC_Os07g41710
Os.17625.1.S1_at--126--1951Chr07:24994211..24994235 (25 bp)
ACGGCGAGAGTGTGTGCTGCTATAA
LOC_Os07g41710
Os.17625.1.S1_at--1109--9951Chr07:24994263..24994287 (25 bp)
TACCCCTCACCTAGTTCTGGAGATT
LOC_Os07g41710
Os.17625.1.S1_at--635--10611Chr07:24994277..24994301 (25 bp)
TTCTGGAGATTACAGCTTTCCCTGC
LOC_Os07g41710
Os.17625.1.S1_at--1018--4711Chr07:24994300..24994324 (25 bp)
GCTGGACCTCTCACTGATAATGACT
LOC_Os07g41710
Os.17625.1.S1_at--614--671Chr07:24994319..24994343 (25 bp)
ATGACTACCGCAAGGCCGAGAGGCT
LOC_Os07g41710
Os.17625.1.S1_at--294--10371Chr07:24994530..24994554 (25 bp)
TTTTCTACCGATGGGCCTGTAAATT
LOC_Os07g41710
Os.17625.1.S1_at--943--8891Chr07:24994596..24994620 (25 bp)
TGAGTTCTGCTCAATCTTTCTAGAA
LOC_Os07g41710
Os.17625.1.S1_at--380--10811Chr07:24994630..24994654 (25 bp)
TTGTGCTCAGTCTTTCTAGAACTCT
LOC_Os07g41710
Target Sequence 
AGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAA
GTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAG
ATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAG
TGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGC
TCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCT
GTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTG
CTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis