Browse Element(s) Details


Os.57169.1.S1_at

Description gb:AK111068.1
DB_XREF= gi:32996277
TID=Os.57169.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E03, full insert sequence.
FL= gb:AK111068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4166011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41610NANA7+24944626..24947241retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g41620OsAffx.16678.1.S1_at11/117+24948790..24952103hypothetical protein
LOC_Os07g41630Os.52226.1.S1_at11/117+24952261..24953116expressed protein
LOC_Os07g41640Os.16757.1.S1_s_at11/117+24954514..24958951Agenet domain containing protein, expressed
LOC_Os07g41650Os.54802.1.S1_at10/117+24959520..24962487Pectinesterase family protein, expressed
LOC_Os07g41660Os.57169.1.S1_at11/117+24964271..24966604expressed protein
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57169.1.S1_at--206--2131Chr07:24965569..24965593 (25 bp)
ACAGAGAGAAGCTAGTGCGCCGGAT
LOC_Os07g41660
Os.57169.1.S1_at--466--2171Chr07:24965531..24965555 (25 bp)
ACACGCACCGGTGTTGATCGGGTAC
LOC_Os07g41660
Os.57169.1.S1_at--912--1931Chr07:24965508..24965532 (25 bp)
ACGGCTTCCACGGTTCTGGCAAGAA
LOC_Os07g41660
Os.57169.1.S1_at--220--2751Chr07:24965488..24965512 (25 bp)
AAGAAGCATTCGAGGCTGCATATGA
LOC_Os07g41660
Os.57169.1.S1_at--123--1851Chr07:24965444..24965468 (25 bp)
ACGCAGGCTAGTGAGACGGCAGTAT
LOC_Os07g41660
Os.57169.1.S1_at--324--1931Chr07:24965429..24965453 (25 bp)
ACGGCAGTATCTGAGATTGCTCGCA
LOC_Os07g41660
Os.57169.1.S1_at--8--8911Chr07:24965418..24965442 (25 bp)
TGAGATTGCTCGCATGTCAGTCCAC
LOC_Os07g41660
Os.57169.1.S1_at--50--771Chr07:24965405..24965429 (25 bp)
ATGTCAGTCCACAGGCCTGAACTTG
LOC_Os07g41660
Os.57169.1.S1_at--385--8431Chr07:24965392..24965416 (25 bp)
GGCCTGAACTTGAACAATCGTCGAA
LOC_Os07g41660
Os.57169.1.S1_at--665--251Chr07:24964328..24964352 (25 bp)
ATATCCCACTTGAAGATCACTTGCT
LOC_Os07g41660
Os.57169.1.S1_at--1012--9691Chr07:24964295..24964319 (25 bp)
TCACAGTTTACTTGGTTTGTTAGCC
LOC_Os07g41660
Target Sequence 
ACAGAGAGAAGCTAGTGCGCCGGATGTGGGATGTGTACACACGCACCGGTGTTGATCGGGTACGGCTTCCACGGTTCTGG
CAAGAAGCATTCGAGGCTGCATATGAGGAGCTTGCTGGTGATGATACGCAGGCTAGTGAGACGGCAGTATCTGAGATTGC
TCGCATGTCAGTCCACAGGCCTGAACTTGAACAATCGTCGAACAAGTATTAGAAATAAATGTGTAACATTTGGTGAAGTG
GAGATGGTAGTTGGAACCCGAATAAGTATTTAGGATTATGTAAAAATTTAATATCCCACTTGAAGATCACTTGCTAAATA
TGATCACAGTTTACTTGGTTTGTTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis