Browse Element(s) Details


Os.50568.1.S1_x_at

Description gb:AK068811.1
DB_XREF= gi:32978836
TID=Os.50568.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159C05, full insert sequence.
FL= gb:AK121873.1 gb:AK068811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4157011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41520OsAffx.22947.1.S1_x_at9/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.2.S1_x_at7/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.3.S1_x_at5/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.5.S1_at2/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41520OsAffx.22947.5.S1_x_at2/117+24882122..24888489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41530NANA7+24892402..24895513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41540OsAffx.16676.1.S1_at11/117+24900227..24901567Sulfotransferase domain containing protein
LOC_Os07g41550OsAffx.28860.1.S1_at11/117+24903637..24904011hypothetical protein
LOC_Os07g41560NANA7+24904606..24905140Flavonol sulfotransferase, putative
LOC_Os07g41570Os.50568.1.S1_x_at11/117+24906808..24910523DEAD/DEAH box helicase family protein, expressed
LOC_Os07g41580Os.49795.1.S1_at11/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41580OsAffx.23994.1.S1_x_at1/117+24919371..24920303CCAAT-binding transcription factor subunit A, putative, expressed
LOC_Os07g41590Os.56189.1.S1_at11/117+24930044..24931495expressed protein
LOC_Os07g41600Os.6242.1.S1_s_at11/117+24932635..24935359expressed protein
LOC_Os07g41600OsAffx.16677.1.S1_at11/117+24932635..24935359expressed protein
LOC_Os07g41600Os.4881.1.S1_s_at9/117+24932635..24935359expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50568.1.S1_x_at--323--10031Chr07:24909865..24910009 (25 bp)
TAGACGCTCAAGATATACGCAAATT
LOC_Os07g41570
Os.50568.1.S1_x_at--334--5131Chr07:24910003..24910027 (25 bp)
GCAAATTTGTTCACTGGCCATCGAT
LOC_Os07g41570
Os.50568.1.S1_x_at--869--8451Chr07:24910017..24910041 (25 bp)
TGGCCATCGATGCAGGAATTCTAAG
LOC_Os07g41570
Os.50568.1.S1_x_at--1104--5951Chr07:24910093..24910117 (25 bp)
GAGAATACTTCTTTGCCAACCTGAA
LOC_Os07g41570
Os.50568.1.S1_x_at--294--331Chr07:24910142..24910166 (25 bp)
ATACTGCTTTGCCAACTTCATCTCT
LOC_Os07g41570
Os.50568.1.S1_x_at--714--2051Chr07:24910156..24910180 (25 bp)
ACTTCATCTCTGTACTGTCCTGTGA
LOC_Os07g41570
Os.50568.1.S1_x_at--577--8711Chr07:24910171..24910195 (25 bp)
TGTCCTGTGATCCTTGAGTGGCATG
LOC_Os07g41570
Os.50568.1.S1_x_at--545--7531Chr07:24910188..24910212 (25 bp)
GTGGCATGTTAATTTCCAACACTCA
LOC_Os07g41570
Os.50568.1.S1_x_at--350--2211Chr07:24910213..24910237 (25 bp)
ACAACGGATCCTTTTATTTGATGAG
LOC_Os07g41570
Os.50568.1.S1_x_at--407--5031Chr07:24910372..24910396 (25 bp)
GCAGTTTAACACTTCAGCATTTTGT
LOC_Os07g41570
Os.50568.1.S1_x_at--929--851Chr07:24910402..24910426 (25 bp)
ATGGCATGCCAGTACAGCAGTGTTT
LOC_Os07g41570
Target Sequence 
TAGACGCTCAAGATATACGCAAATTTGTTCACTGGCCATCGATGCAGGAATTCTAAGAAGTTGTCCTATTAAATAGTTTC
TTGGCAGGATGATTTGATAGTCAAGATAGAGAATACTTCTTTGCCAACCTGAATTTGAAAATTTTGGGCCAGGGGCCATA
CTGCTTTGCCAACTTCATCTCTGTACTGTCCTGTGATCCTTGAGTGGCATGTTAATTTCCAACACTCAACAACGGATCCT
TTTATTTGATGAGATACAGTAATTGTTGTGGACTTGAAAGCAAAAGTTATGAGTTCATCACAGTACAAAGGGACGATGTT
TAATTTTTAAGCCAAAAATTGTAAACATATAATTGTTCTGTAGTGGCATGTAAATGTGTTAGTTATTGCAGTTTAACACT
TCAGCATTTTGTTTCTTATGGCATGCCAGTACAGCAGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50568.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis