Browse Element(s) Details


Os.4209.1.S1_a_at

Description gb:AK066230.1
DB_XREF= gi:32976248
TID=Os.4209.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU065533(C2174) corresponds to a region of the predicted gene.~Similar to Homo sapiens splicing factor Prp8 mRNA, complete cds.(AF092565) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057K01, full insert sequence.
FL= gb:AK062042.1 gb:AK066230.1 gb:AK099780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0708011/11Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g070503/11Pre-mRNA processing splicing factor 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07040Os.15798.1.S1_at11/116+3341465..3345319AUX/IAA family protein, expressed
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein
LOC_Os06g07070Os.4208.1.S1_at11/116+3359543..3362524Protein kinase domain containing protein, expressed
LOC_Os06g07080Os.4209.1.S1_a_at11/116+3362870..3367262Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os06g07090Os.4210.1.S1_at10/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07090Os.45879.1.S1_at1/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07100Os.27183.1.S1_at11/116+3387787..3389472Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4209.1.S1_a_at--459--5631Chr06:3363532..3363556 (25 bp)
GACACCGGAAGCAACCCACATGGAT
LOC_Os06g07080
Os.4209.1.S1_a_at--424--232Chr06:3363509..3363533 (25 bp)
ATATCTCCCGACTCACTACGAGAAG
LOC_Os06g07080
Os.4209.1.S1_a_at--1019--5311Chr06:3363488..3363512 (25 bp)
GAAGGTCCAGATGCTTCTCAGCGAC
LOC_Os06g07080
Os.4209.1.S1_a_at--372--3751Chr06:3363472..3363496 (25 bp)
CTCAGCGACAGATTCCTGGGATTCT
LOC_Os06g07080
Os.4209.1.S1_a_at--727--3891Chr06:3363366..3363481 (25 bp)
CTGGGATTCTACATGGTGCCGGATA
LOC_Os06g07080
Os.4209.1.S1_a_at--550--6452Chr06:3363345..3363369 (25 bp)
GATAACACCCCTTGGAACTTCAACT
LOC_Os06g07080
Os.4209.1.S1_a_at--9--2511Chr06:3363330..3363354 (25 bp)
AACTTCAACTTCATGGGAGTCAAGC
LOC_Os06g07080
Os.4209.1.S1_a_at--325--6091Chr06:3363314..3363338 (25 bp)
GAGTCAAGCACGACCCGCTGATGAA
LOC_Os06g07080
Os.4209.1.S1_a_at--1022--2491Chr06:3363285..3363309 (25 bp)
AACATGAAGCTTGGCACGCCCCGGG
LOC_Os06g07080
Os.4209.1.S1_a_at--256--7632Chr06:3363263..3363287 (25 bp)
GGGACTTCTATCACGAGGACCATCG
LOC_Os06g07080
Os.4209.1.S1_a_at--875--5771Chr06:3363235..3363259 (25 bp)
GACGCATTTCCTCGAGTTCAGCAAC
LOC_Os06g07080
Target Sequence 
GACACCGGAAGCAACCCACATGGATATCTCCCGACTCACTACGAGAAGGTCCAGATGCTTCTCAGCGACAGATTCCTGGG
ATTCTACATGGTGCCGGATAACACCCCTTGGAACTTCAACTTCATGGGAGTCAAGCACGACCCGCTGATGAAGTACAACA
TGAAGCTTGGCACGCCCCGGGACTTCTATCACGAGGACCATCGGCCGACGCATTTCCTCGAGTTCAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4209.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis